RNA id: TU152921


Basic Information

Item Value
RNA id TU152921
length 575
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G103514
representative True

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 3962711 ~ 3963285 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTCTTATGCTGTGAGGTATGCTGGAATATCTGAACAGGGTAAGATAACTCTGAAACATTGGCCTTATCCCAAGATGTTCCTTCAGGAAGGGAACCTGTGTTGATGTCATTGAGCCGCTCCACCCATCACAGTTAACGGCAGGCTTCCAGCTATTAAGCAATCTACATACagttgttatattgttttgaggCATGACAGGCATGGACACTGATTTGCTGACATACATAACATGACTCATTGGTGTGATGTCTAGCTGTCCAATTGGCATATTGCCAGAACAAATTATCAGTAGGTAAAACACAGTTCACACAttgtaatgatacaaaaatcatgaatactaacagaagctgcattctgatcaaataataattaaataatataatcaaaggaTATGTGCAGTCAGTTTCTATGTCAGCAACAGcgctgcgtgttcagctcctctGTTGTGCAATAGCAACCAATCTACGTAAGAAGTCGTCAGGTCGTCAGTCCAGTAATGCGCACCGTCCAGCCCCTCCCGTCCCGTGACAGTAGTGATCAATGATCCTACAAGAGTGGCCCCTTGTTCAGGTGT

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152915 lncRNA downstream 16301 3946207 ~ 3946410 (-) True G103508
TU152841 lncRNA downstream 126463 3835190 ~ 3836248 (-) True G103464
TU152832 lncRNA downstream 135533 3826962 ~ 3827178 (-) True G103455
TU152831 lncRNA downstream 135953 3826554 ~ 3826758 (-) True G103454
TU152829 lncRNA downstream 137156 3825279 ~ 3825555 (-) True G103452
TU152922 lncRNA upstream 477 3963762 ~ 3964040 (-) True G103515
TU153182 lncRNA upstream 543071 4506356 ~ 4572914 (-) False pcp4b
TU153233 lncRNA upstream 693134 4656419 ~ 4659476 (-) True G103753
TU153238 lncRNA upstream 699311 4662596 ~ 4667353 (-) True G103754
TU153240 lncRNA upstream 714311 4677596 ~ 4678231 (-) True G103756
XM_043258404.1 mRNA downstream 35351 3837856 ~ 3927360 (-) False mre11a
XM_043258405.1 mRNA downstream 35388 3837856 ~ 3927323 (-) True mre11a
XM_043258407.1 mRNA downstream 35643 3853829 ~ 3927068 (-) False mre11a
XM_043258403.1 mRNA downstream 35645 3837856 ~ 3927066 (-) False mre11a
XM_043259618.1 mRNA downstream 188926 3751979 ~ 3773785 (-) False LOC122359312
XM_043259148.1 mRNA upstream 60528 4023813 ~ 4042596 (-) False LOC122359034
XM_043259147.1 mRNA upstream 60528 4023813 ~ 4042596 (-) False LOC122359034
XM_043259146.1 mRNA upstream 60528 4023813 ~ 4042595 (-) True LOC122359034
XM_043259151.1 mRNA upstream 81462 4044747 ~ 4076667 (-) False pik3cb
XM_043259150.1 mRNA upstream 81462 4044747 ~ 4076667 (-) True pik3cb
TU152826 other downstream 145969 3816062 ~ 3816742 (-) True G103449
TU152820 other downstream 188897 3753341 ~ 3773814 (-) True LOC122359312
TU152818 other downstream 192448 3753341 ~ 3770263 (-) False LOC122359312
TU152821 other downstream 207544 3753341 ~ 3755167 (-) False LOC122359312
TU152714 other downstream 799163 3156930 ~ 3163548 (-) False LOC122358351
TU153319 other upstream 1474763 5438048 ~ 5438947 (-) True G103825
TU153427 other upstream 1781247 5744532 ~ 5749339 (-) False pgm2l1
TU153584 other upstream 2182888 6146173 ~ 6146517 (-) True G104011
TU154060 other upstream 3151141 7114426 ~ 7119286 (-) False mmp28
TU154467 other upstream 3606561 7569846 ~ 7572090 (-) True G104603

Expression Profile