RNA id: XM_043259148.1


Basic Information

Item Value
RNA id XM_043259148.1
length 5372
RNA type mRNA
GC content 0.45
exon number 23
gene id LOC122359034
representative False

Chromosome Information

Item Value
chromosome id NC_056713.1
NCBI id CM032082.1
chromosome length 23709629
location 4023813 ~ 4042596 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCAGCGAGTGAGCCACTGCTTTCAGCTGTAATAGGGACCGGTGGAGTATTGTACAGTAGCCTATGCCAGGATTTATACGTGCCACGCTGTGACAAAAGTACGTCGGGACAACGGTGATATCACCAAAGACCTGGACCGGGAATCAAGCGTCCTTTTGCTGCTACAACATGCAATTGGGTCAGGGGACCTTTGACCTGAAATGTAAAGCTTGACCTTGTCTATGTCAGGTGAGACAGAGCCAAAGCCCTACCTGTACAGGGGTGAATCTGAGTCCCTGTGTGGCTCTATGTCTCATCTGCACCACATGGACGGGGCCTCTGAGGGGAGTGACAGCAGTCACGACCCACCCAGTTCTCCGAGGCCTCAAACACAGATGCATGAGGACATGGAGATGGGCGGAAGTGGCTCTAGTGGAAGTGGCACAGAATCTCACAGTAACGAGTATCACAGTAATGAATCGCATGGAAATGAGTCTGTGGGGAGTTCCAGTGGAAATGGAAAAGATTCTGCAATAATGGCATCATCAGGGAGTAACAAGAGCTCAAACTCTCAAAGTCTTTCCCCTCCCAGTAGCAACAATGCATTCAGCTTAGTCAGTTCAGAGCAAGACAACCCATCAACCAGCGGCTGCAGTAGTGAACAGTCAGCAAAAGCTAAGACACAGAAGGAGCTTTTTAAGACCTTAAAAGAGCTGAAATATCACCTCCCTCCTGACAAACGCAACAAGGGCCGGGCAAGCACACTTCACACCCTCAGATATGCCCTGCGCTGTGTCAAACAAGTCAAAGCCAACGAAGAGTACTATCAGATGCTTATGATCAATGACAGTCAGCCCTCAGGTCTGGACGTGTCCTCATATACTATTGAAGAAATCAACAGTATTACCTCAGAATATACCCTAAAAAATGCTGATATTTTTGCAGTTGCAGTGTCCCTAATTACAGGAAAGATTGTGTACATTTCGGAACAGGCTGCAGGGATCTTGAACTGCAGAAAAGATGAGTTCAAAGACAGAAAATTTGTGGAGTTTCTGACACCTCGCGATGTCAGTGTGTTCTACAGTTTTACTACACCCTACAGACTTCCATCTTGGAGCATGTGCACCGGAACAGAGTCATCATCAACTGAGTTCATGCAAGAGAAATCCTTCTTCTGTCGCATCAGtggTGGTAAAGAGAAGGAAGGAGATCTGCAGTATTACCCATTCAGGATGACCCCATATTTGATGAAGGTTCAAGACTCAGAGCTCTCTGAGGAACATTTCTGCTGCCTCATATTGGCTGAGAGAGTTCACTCTGGATATGAAGcaCCAAGAATTCCACCTGATAAGAGAATCTTTACCACAACACACACGCCAAACTGTGTGTTTCAAGATGTTGATGAAAGGGCCGTGCCTTTGTTAGGATTCCTGCCTCAGGACTTGATTGGGACACCTCTTCTGTTACATCTGCATCCCAGTGACAGACCTATAATGTTGGCAGTGCACCGGAAAATTCTGCAGTATGTTGGACAGCCAATTGATCACTCCTCCATCCGATTCTGTGTGAGAAATGGAGAATATGTTACACTTGATACAAGCTGGTGTAGCTTTGTGAACCCTTGGAGCCGCAAAGTGTCTTTTGTGATTGGACGACACAAAGTGCGCATGGGCCCGATGAATGAGGATGTGTTTTCAGCTCCGGCCTTTACAGATGAAAAGGTTATGGATTCAGATATACAGGAAATTACTGAACAGATTCACAGACTGCTTTTACAGCCAGTCCATAGTATGGGGTCAAGTGGTTACGGCAGTCATGGCAGCAATGGTTCTCATGAGCACCTGCTGAGCATAGCATCCTCTAGTGACAGTAATGGAAATggaaacacagcaaacaatgGGAACAGGATCAGTGGAAATACCAAAAAGGAGGAGGGCAAAATGAAACCGAGGTCATTTCAGGAGATTTGTAAAGGGGTTCACATGATGAAAGCTCAGGAACAGCAAAGTTCTTTTTCCAAAGCAGAACAGAAAAAGTTTTTGGACAGGTTCCGGTCTCCTGTTGTAAAGCAGAAAGACTCTGCACTGCTGGTTAGAGATGGACCTGCAACAATGGAGGAACTCAAGGACCATACAATGTACTCATACCAGCAAATCAGCTGTCTGGACAGTGtcatcagATATTTGGAGAGCTGCAATGTCCCGAACACAGTAAAACGAAAGTATCAGTTCTCCTCAAACACCACCTCCTCAAATTCAGATGATGACAAGAAAGCCTCTGATGCCAGTCTACAGCAAACTGATGattCCCTAGGTATGGAAGCACCATCTTCAATATCTATAAAGTCCAATGAAAAGTCTCCGCCAGGGTCTGTCCCAGGTCGTGTTGTTGGAGGGCCTTTATCTCCCTTGGACCTAGCCAGCAAAGCAGACAGTGTAGTTTCTCAGTGTTCCTACAGCAGCACAATTGTACATGTGGGAGACAAAAAAACGCAACCAGAATCAGAGATCATTGAGGATGCTGCAGAAAGCCCAGCCCCTTCTGCACCTGTGATTTCCCCACCCACAGTGGAGCAGGAAGCCTATAAGAAACTGGGACTTACAAAACAGGTGCTGGCagcgcacacacaaaaagaagagCAAGCATTTTTAAGTCGGTGTAGGGAACTTCGGAATGCTCAAGCCCTTCAGAAGGATTGCCCACCTAGCACACAAAGAAACCGAGGACAGGCTGCTGAGGGAGCTTGTGGATCCAAAGCAGTAGCAGGTGTCCCTGTTACAGAGGCCACCACCAAGAAAAGCTGGCGCACCAAAAAGTCGAAAAAAGCTCGCACAAAACATCCTGATTCATCAGACAATGCTGCATCTCAGCACAGACCTCTCCCACCCCTGCAGGGTTTAAACCAGACATCTTGGTCCCCCTCTGAGACGTCGCAGTCTGGCCTTTCAGTTCCATTTCCAGCTGTGGTCCCAGGATATCCTCTCTACCCTGTAGTTCCCTCTGTTGCCCCACCCCAAGCCCCTACGGGAGTAGCAGATTCCCAGAACACTCAGGCCACACCCTCTACAGCTTCATATCCTACATCATTAGTCACACCAGTTGTAGCGTTTGTTTTGCCTGGTTTTATGTTGCCACAGATAGGTACAGCACCTACTCAGCAAGCTTACAGTACACTTTTTCAGACTCAGCAAGCCTACAATGGCCAGCAGCCCTTTCAGCCCCAGCAAGCCTACACCAGCCAACATGGATTTCAGCCACAACAAGCCTACAGCAGCACGCAGCATCTTCAAAACACTCAAGGCTGCAGTACTCACCGGTGCTTTCAGACCCACACATCCTTTACTTCCCAGCAGCAAGCATTTACACCCCAGACACATTTTCAGTATGGAATGACACCTGGCCCCAAACACTCTGCCATTGAGTCCACAGAGTGTCCTTCACCTTTGCCACCCCCTCAGTCCCCCCCACTGTTTGAGTCTCGCTGTAGTTCTCCACTGCAGTTGGACCTGCTTCAGATGGAGGAAAAGCAGGACTCTCATACTGCAGCACCCCAGTCCAGCACCCAGGGTAATTGCAGTTTAGTAGTGGACAAAAACAACACCTCCATTAAAAGTGCTTCTGCAATGGATGACCTACAGCAGGCATGTTGTTCAGGTAACGGTGACCTCTGTGGTGATCACTCCTCATCCAGCAGCGTGTTGGACCTGTTGTTGCAGgaagactctcattctggcatGGGCTCTGCCATGTCAGCATCCACTGGCTCCACTTCCAATGACTGCAACACCTCTAACAGTGGAACAGGAAGCAACACAAGCAAGTATTTCGGCAGTGTGGACTCCTCAGAAAACAATCACAAGAGTGAATACATAATGAAGGAACAGGAGGAGAGTTTTAAATATGTTCTTCAAGAGCCTATTTGGAGACTTACGGCCAATGATGATGACTGTGTCATGATGACCTATCAAGTGCCATCAAGGGATATGGAAAAGGTTCTGGGGGAAGATAGGGAGCGTTTAAGGCGCATGCAGAAGAACCAGCCCCGTTTCTCATCAGAACAGCGTCGAGAACTGATTGATCAGCACCCCTGGATGAGGAGAGGAGCGTTACCCAATGCAATCAATGTCATGgAGTGTATGTACTGTGAGAATGACGTCTCTGCCCCGCTAGAAGAAGACTTGCCAGATATGGAGTTGGGCATTTTGGGAGGAGAAGTGGTACAACATGGAGGAGGGTCTCATTtacaggaagaggaggagaaaccTAGTGAATAATCTGAAAATTTTGCACTAATCTCAGCCAGCAGAGGGCAACAGGACTTTTTAGTATCCCTCCTGTACACACAAAGTAAAATTGTCTGAAAGTATCTATTCAGAtatcttttgtcattttaaaagattatgaatgtgtttgtgagtgtgtgtgtacatgtgtaaaaacaaaacgtaTGCCAGGTAGCTGATTTATTAACCCAAAGATGCTGTATAAATGTGCAAACTCTGATTGGATGGAACCGCTGTCACATGGACCTAACATACTCTGTGGTTCTGCATCTTTACAGTTTTGCCAGCTCACTCTACTGTTTATATGTAGCTacagcaatgtttttttcagtgtattgaTGCTTTGTTCAGAAATTGTCAGACTATGTTTGTACCAGCTAAGAGTGGAATCAGGTGTAgtgcatcataaaaaaaagtccTATTATGAACACAAAAGTATATGGGccattgcattttacaaaaaaaatctaaaccagGAAATGAAACGCCTCCATACTGTGTATTTGGGGACCATTCCGGCCAAATAAGCTGTTGTGTCATTTTGTTAAGAGGACAGCAAGTGTTTGTTGCATGTCTTCAGGGATGTGCAATCAtggaaacaaatatttttgtagatgTCTTTTGTAAGTCATAAAAACTTGACCATGTACTTATCTGCCTTTctcttcatttttctttcatgtcttCTTTTGGCTATACAAATGTTGTAGTCACATTGCAGTCATTCAACAAAGATGTCAGGGCAATAGTTCTCTGAGGGGAGGAGACTAGATTTATTATGTGTAGCATTCTGTAAAAGGTCTGAAGCTGTTCCTATACCTGAAATACTCGTTTTCTTTTATCTGAAATTCAGTGAGTATACGCTTATGGCCAGTAGTGCTGACGCAGAAAAATTGGAACTGGCTCTACATCTGTTTCTGATTTGTGAAGTATTAAGGCAAGAGACTGTATGACAAGCTGAAAAGTAGGGTTATGGCGACTGTAAAATTGTTTATTCAAATTTGTCATTTGGTTTGTGGCTGtattttcatctttcttttttcataaatgtagTAAATTAAACTTGTCACTTTATTCCtaccttttaataataaaaatataatatcgACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152922 lncRNA downstream 59773 3963762 ~ 3964040 (-) True G103515
TU152921 lncRNA downstream 60528 3962711 ~ 3963285 (-) True G103514
TU152915 lncRNA downstream 77403 3946207 ~ 3946410 (-) True G103508
TU152841 lncRNA downstream 187565 3835190 ~ 3836248 (-) True G103464
TU152832 lncRNA downstream 196635 3826962 ~ 3827178 (-) True G103455
TU153182 lncRNA upstream 463760 4506356 ~ 4572914 (-) False pcp4b
TU153233 lncRNA upstream 613823 4656419 ~ 4659476 (-) True G103753
TU153238 lncRNA upstream 620000 4662596 ~ 4667353 (-) True G103754
TU153240 lncRNA upstream 635000 4677596 ~ 4678231 (-) True G103756
TU153271 lncRNA upstream 665218 4707814 ~ 4709080 (-) True LOC122359119
XM_043258404.1 mRNA downstream 96453 3837856 ~ 3927360 (-) False mre11a
XM_043258405.1 mRNA downstream 96490 3837856 ~ 3927323 (-) True mre11a
XM_043258407.1 mRNA downstream 96745 3853829 ~ 3927068 (-) False mre11a
XM_043258403.1 mRNA downstream 96747 3837856 ~ 3927066 (-) False mre11a
XM_043259618.1 mRNA downstream 250028 3751979 ~ 3773785 (-) False LOC122359312
XM_043259151.1 mRNA upstream 2151 4044747 ~ 4076667 (-) False pik3cb
XM_043259150.1 mRNA upstream 2151 4044747 ~ 4076667 (-) True pik3cb
XM_043258312.1 mRNA upstream 41195 4083791 ~ 4088018 (-) True foxl2a
XM_043258818.1 mRNA upstream 123913 4166509 ~ 4187843 (-) False rinl
XM_043258819.1 mRNA upstream 123913 4166509 ~ 4187843 (-) True rinl
TU152826 other downstream 207071 3816062 ~ 3816742 (-) True G103449
TU152820 other downstream 249999 3753341 ~ 3773814 (-) True LOC122359312
TU152818 other downstream 253550 3753341 ~ 3770263 (-) False LOC122359312
TU152821 other downstream 268646 3753341 ~ 3755167 (-) False LOC122359312
TU152714 other downstream 860265 3156930 ~ 3163548 (-) False LOC122358351
TU153319 other upstream 1395452 5438048 ~ 5438947 (-) True G103825
TU153427 other upstream 1701936 5744532 ~ 5749339 (-) False pgm2l1
TU153584 other upstream 2103577 6146173 ~ 6146517 (-) True G104011
TU154060 other upstream 3071830 7114426 ~ 7119286 (-) False mmp28
TU154467 other upstream 3527250 7569846 ~ 7572090 (-) True G104603

Expression Profile