RNA id: XM_043261122.1


Basic Information

Item Value
RNA id XM_043261122.1
length 2469
RNA type mRNA
GC content 0.46
exon number 16
gene id cdh17
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 16672486 ~ 16681942 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttacaTCAAAAGATGAAGGGGAGACATACCATATAAGCGAAGAGAACGAAGGAAAGATCGGTATTTCTTCCGACGGCTGGCTATACCTGGAGGAAGCTCTGGAATGGAGCCCTGAAAAAAGACACCATCTAGgaATTGAAGTACGTTCAGCAGATGGTGAAACTGTTGATGGGCCTTACAAGGTCGTCTTGCACGTTGTGGATGTCAATAACAAACACCCCATCTTTAGTGAGAGTCAGTACAGCGGCCGTGTTTGCTACCGATGCGGACGATCACAACACATTAAATGGCCAATTTAGATTCAGCATTGTGAACCAAATCCCAAATCCCGGAAATGGTTTCTACTTTGATATTAACCCTGAGAGTGGAGAGATCTTTATAACAGAGGAAGGAGCAAAGTCTTTGAAGGCCAGGCCCACTGTAATGTACAGCCGCGGGGAGGTCCATGGCAGTCCTGATGTCCTGAAGAAGAAGTTTGAGGACTACTGTATTCCAAGGAACAACATGCCTCTGGAGAACAACCCCTTTTACACGTGCATCGAACGTGCTGAAAGAAGAGAAGTGAATCTTCTCCAAGATCCGGACTATGCACTGATTGTTCGTGCAGAGGATTTAGGAGCTCCGAACGCTTTGAGCAGCACGACACGGGTCAACGTAGCTATTATTCAAAACCTCTGGGTCAGCCCTGGACCAATCAAAATCAGAGAAAATTTGGAAGAGGATTACCCTTTGTATCTTACCACGgTGCGTGCCAATGATCCCACCGCATTTTACAAGCTGGTACAGAAAGAAAGGCTTCCCTTCCCTTTCACCATCAATGATGATGGAGAAATCCATGTAACCGCTCCTCTGGATAGAGAAGAGAAAGATATGtacaCTTTGGTGGTCTTTGCAGAAGACGAACAGGGTGTTGAGCTGGAAAAACCCATGGAGATTCATGTGCAGGTGGAGGATATAAATGATAACCCTCCTGTGTGCAATGAAGCTGTGTTTGAGGTGCAAGAGAATGAGCCCATAGGTAATCAAATCGGTGTTCTGCCTGCTCATGATAGTGATGAGGAGGGCACACTGAACTCATTATTAGTCTACACACTTGTAAGCCAGAAGCCTAACAAGCCGTTCGTGGGAATGTTCACCATCGACCAAGTCAATGGTGAAATCAAAGTGGCAAATAAAAACTTCCAAAGGAAAGAGGTGCCTCAGTATGAGCTCACCTTTAGTGTGACTGATGGAGTTTACACTGCGGAATGTAAAGCAATCATCAAGGTCATCGACATCAATAACGAGATCCCTGTCTTCGAGAAAaaagatTATGGGACCCACAGTGTTCCTGAGCTAGCTGAGTTGGGAACCACTTTGCTCATCATCAAAGCCACGGATGCAGATGACCCAGGAACAGGAAGCTCTAGGGTGGAGTATCACATCACTGCTGGAGACCCACATAATCTCTTAGCCATAGAAGTTAATGAAGAAACTGGAGAAGGCAGAGTCTACATCGCTCGGCCACTGGATTATGAGCTCCAGAGCGTCTTCCACCTTCAGATTGATGCCCGTAATCCTGAGCCTCTGATCGAAGGAGTGGAGTATAATGAAAATGCCACCACATTTGTTGTCATTGAGCTGGTGGATGTGGACGAACCTCCACAATTTGAAGTGCAAACTCTTAACGTTAACGTCCCAGAAAACATCACGGTTGGAACCGTAATAATGACAGCTGAAGCCAAGGATCCAGAGGGAAAAACTATCAAGTTTAAGATGGAAGGTGATGAACATAACTGGTTGGAGCTGAACGCTGACTCTGGAGAGCTGAAGACTAAAGCTGCTCTGGACAGAGAAACGGTGGAGCAGATCTCTCTCACAATCATCGCTTACGAGACAGAGGGAGACAAGCAGGAGGCTGAGATGAATGTGGATATTCATCTGCTGGATGTAAATGACAACTACCCTAAGCTGCAGAAGACACAGGGCTTCATCTGCATTCAGGATATGACCCCCTTGAAGCTCACTGCTGTAGATAAGGACGCTGACCCCTACGGAGAGCCTTTCACCTTCTCCATGAACCGCAAGTCACCAAACTTCGAGATCAAACCTCTGGACGGAACCTCAGCACAGCTGATTTTGAAGAAGAAGCCGTCAAGTGATATGAATGCCACTGTTCCCATCAACATCAAAGACAAAGCTGGAATGGGTATCACTCAAAAGTTTGAcgtgCGTATATGTAACTGCACAAAACTGGGCTACTGTTACATCGAGCCAGCAGCTCACAGCTGGAAGCTGGGCATGAGTGGCACCATTGGCATCCTGGCAGGAATATTCGGCTTCATCAcTCTGTCCATGATCATTGTCATCTACCGAATCAAGAAGAAGGATCAGCAGAGAGCAGCAACTTCTGAAGAGACTAAAGTAATGCTCTAGAGTCGGGATAATATGCCAGCTGTAAACATCATTCGGTACACAATCCAGGCGAA

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167436 lncRNA upstream 52897 16593092 ~ 16622682 (+) True G113379
TU167432 lncRNA upstream 57857 16586100 ~ 16617722 (+) True G113377
TU166889 lncRNA upstream 256529 16417880 ~ 16419050 (+) True G113020
TU166888 lncRNA upstream 259949 16414657 ~ 16415630 (+) True G113019
TU166856 lncRNA upstream 293190 16378725 ~ 16382389 (+) True G113002
TU167430 lncRNA downstream 293 16682235 ~ 16683830 (+) True G113375
TU167468 lncRNA downstream 116163 16798105 ~ 16802754 (+) True G113398
TU167477 lncRNA downstream 137453 16819395 ~ 16820019 (+) True G113401
TU167626 lncRNA downstream 187703 16869645 ~ 16869869 (+) True G113512
TU167631 lncRNA downstream 228418 16910360 ~ 16911881 (+) False stx17
XM_043260017.1 mRNA upstream 4820 16666676 ~ 16670759 (+) True gem
XM_043260013.1 mRNA upstream 10801 16652160 ~ 16664778 (+) True rad54b
XM_043260014.1 mRNA upstream 10801 16652160 ~ 16664778 (+) False rad54b
XM_043260015.1 mRNA upstream 17716 16654048 ~ 16657863 (+) True LOC122359829
XM_043261264.1 mRNA upstream 29140 16631606 ~ 16646439 (+) True virma
XM_043261128.1 mRNA downstream 12470 16694412 ~ 16697173 (+) True LOC122360491
XM_043261124.1 mRNA downstream 20018 16701960 ~ 16781427 (+) True galnt1
XM_043261123.1 mRNA downstream 20018 16701960 ~ 16781427 (+) False galnt1
XM_043261125.1 mRNA downstream 41836 16723778 ~ 16781427 (+) False galnt1
XM_043261775.1 mRNA downstream 138982 16820924 ~ 16823983 (+) True sec61b
XR_006252799.1 other upstream 363572 16302542 ~ 16312007 (+) False cblc
TU166618 other upstream 1020601 15651519 ~ 15654978 (+) False LOC122360429
TU166579 other upstream 1199378 15444659 ~ 15476201 (+) True G112816
TU166571 other upstream 1236353 15435772 ~ 15439226 (+) True G112811
TU166563 other upstream 1262738 15411833 ~ 15412841 (+) False apoc4
unassigned_transcript_2158 other downstream 11635 16693577 ~ 16693649 (+) True trnat-ugu_48
TU167461 other downstream 85118 16767060 ~ 16823978 (+) False sec61b
TU167460 other downstream 139008 16820950 ~ 16823978 (+) False sec61b
TU167859 other downstream 718392 17400334 ~ 17401757 (+) False acbd7
TU167860 other downstream 718392 17400334 ~ 17407196 (+) True acbd7

Expression Profile