RNA id: XM_043261128.1


Basic Information

Item Value
RNA id XM_043261128.1
length 2062
RNA type mRNA
GC content 0.40
exon number 7
gene id LOC122360491
representative True

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 16694412 ~ 16697173 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTCTCTCTTCGGAGTTATAGGATGACTTCTCTGAACTTCTCTGAAGAAGGATTCTTTGATGTTGACTGAAAACCTACTAAGAGGACCATGTATTTGTACTGGACTGGGGGTCTATCAGCAAACAGCATCTGATTCAAATGgttatttatgaaacaaaagAAGAGAAAGTTCATTGGATTTGAAAGCTGGAAATGGCTTTTGTGAAAAGAGTATCGTTGGAGGATCTCTCTTGTCCTGTGTGCACTGAAATATTCAAGGCTCCTGTTATGCTGTCATGTAGTCACAGTGTCTGTAAAGAATGTCTTCAGAAGTTCTGGCAAACCAGAAATACTCAGGATTGTCCTGTCTGCAGGAGAAGATCTTCAAAACTCGGTCCTCCTTGCAATCTGGTGTTAAAAAACTTGTGCGAGTCGTTGACAGTAGAAAGCGCTTCAGGGTCCGAGGAGGTCTGCAGTCTCCACAACGAGCAACTCAAACTTCTCTGCTTAGACGATGATcagcttgtgtgtgtcgtgtgcagaGATTCAGAAAAACACGGGAATCACAGATTCCGCCCCGTTAATGAAGTTGTTCCATCTTACAAGGAGCAGCTCAAAACAGCCTTGACGTCCTTACAAGAGAAGCTTAAACAtacagaaaaaatgaaaaaagagtATAATACAACAGTTCTGCAAACCAAGACTCAGGCCGAGCACACAGAGCAGCAGATTAAAGAGGAGTTTAAGAAGCTTCATCAGTTTCTGCgagatgaagaaaaaactaCAATCGCTGCACTGAGGAAAGAGGAAGAGCAGAAGAGTCAGAAGATGAAAGAGAAGCTTGAGGAGATTAACAGACAGATCTCAGCTCTATCAGAAACAATAGAAGACATAGAGGAGAAGATGAACGCCAGTGATGTCTCAATTCTACAAGAATTCAATGTCACAATGGAAAGAGCCCAGAGTTCACAGCTAGATCCAGAGATGCTTTCAGGAGCTTTGATCGATGTGGCAGATCATCTGAGAAACCTGACCTTCAGAGTCTGGAAGAAGATGCAGGAACTTGTTCAAAACACTCCCGTGACTCTGGATCCAAACACTGCACATCCACGTCTGATTCTGTCTGATGATCTGACCTGTGTGAAGTACAGCAAGACACAGCAACTGGTTCCTGATAATCCAGAGAGGTTTGAGATATATTCCTGTGTTCCAGGTTCACACGGATTTAACTCAGGGAAACACTTCTGGGATGTGGAAGTTGGAGACAATTCATGGTGGATCATTGGAGTAACCACGGAATCAAACCAAAGGAAAGGAGCAGATTTCTTTAACACCAATGTGTGGTGCGTGTGGTACAATGATGACAAATATTTCTCACAGTCTCAAGAGATCCCCAACAACCCCTTTTCAGTTGAAGAGAAGCTTCAGAAGCTGAGACTGGAGCTGGACTGGGACAGAGGAAAACTATCATTTTGTGATGCAGTAACTAACAAACATTTGTGCACACTGACAACCATCTTCACAGAGAAAGTCTTTCCATTCTTTTATAGTTGTGATGAAAGACCTTTAAGAATATTACCAGCTAAAGTGGTTGTTGGAGTCCAGTCCGTGGGGGAACCACCGGAAAGCAATTTATACCAGGGGGTAGAAAGTATATGATATTAAAGGCAACAGACAGAATTATTAAGGTGGTGATAAAATGTTCTCTTGGAAACAATTTCAGGAAAGTTCATTTCTGACCATGTACTGTAATAGTCACAAACTGTAAacagtataattattattagtagccaatattttactataaatcAATTATTTGTGCTACTGAATCTGctgatattaaaattttaaatggtcGCTGATTGTAGCTCTTTTGAAACCCATTACCTGTAAGACCTGAAACTCTTAAATGACCTCATGCTCAAATAAATCGAATTCAATTAACTTGTATGTTAATAGCATCTTTCGTAAcgtttcaatttaaaaaaaaaaaaaaaaaaagtctgtcttTAGCTCTAATGTGAAGTAACTCCATATTTGGTGGCTGCtactattttatcatttaatttacagAAGTTTAGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167430 lncRNA upstream 10582 16682235 ~ 16683830 (+) True G113375
TU167436 lncRNA upstream 71730 16593092 ~ 16622682 (+) True G113379
TU167432 lncRNA upstream 76690 16586100 ~ 16617722 (+) True G113377
TU166889 lncRNA upstream 275362 16417880 ~ 16419050 (+) True G113020
TU166888 lncRNA upstream 278782 16414657 ~ 16415630 (+) True G113019
TU167468 lncRNA downstream 100932 16798105 ~ 16802754 (+) True G113398
TU167477 lncRNA downstream 122222 16819395 ~ 16820019 (+) True G113401
TU167626 lncRNA downstream 172472 16869645 ~ 16869869 (+) True G113512
TU167631 lncRNA downstream 213187 16910360 ~ 16911881 (+) False stx17
TU167662 lncRNA downstream 270761 16967934 ~ 16968793 (+) True G113537
XM_043261120.1 mRNA upstream 12470 16672486 ~ 16681942 (+) False cdh17
XM_043261121.1 mRNA upstream 12470 16672519 ~ 16681942 (+) True cdh17
XM_043261122.1 mRNA upstream 12470 16675579 ~ 16681942 (+) False cdh17
XM_043260017.1 mRNA upstream 23653 16666676 ~ 16670759 (+) True gem
XM_043260013.1 mRNA upstream 29634 16652160 ~ 16664778 (+) True rad54b
XM_043261124.1 mRNA downstream 4787 16701960 ~ 16781427 (+) True galnt1
XM_043261123.1 mRNA downstream 4787 16701960 ~ 16781427 (+) False galnt1
XM_043261125.1 mRNA downstream 26605 16723778 ~ 16781427 (+) False galnt1
XM_043261775.1 mRNA downstream 123751 16820924 ~ 16823983 (+) True sec61b
XM_043261083.1 mRNA downstream 176633 16873806 ~ 16896250 (+) True nr4a3
unassigned_transcript_2158 other upstream 763 16693577 ~ 16693649 (+) True trnat-ugu_48
XR_006252799.1 other upstream 382405 16302542 ~ 16312007 (+) False cblc
TU166618 other upstream 1039434 15651519 ~ 15654978 (+) False LOC122360429
TU166579 other upstream 1218211 15444659 ~ 15476201 (+) True G112816
TU166571 other upstream 1255186 15435772 ~ 15439226 (+) True G112811
TU167461 other downstream 69887 16767060 ~ 16823978 (+) False sec61b
TU167460 other downstream 123777 16820950 ~ 16823978 (+) False sec61b
TU167859 other downstream 703161 17400334 ~ 17401757 (+) False acbd7
TU167860 other downstream 703161 17400334 ~ 17407196 (+) True acbd7
TU168130 other downstream 1144644 17841817 ~ 17847410 (+) True ensab

Expression Profile