RNA id: XM_043261351.1


Basic Information

Item Value
RNA id XM_043261351.1
length 2729
RNA type mRNA
GC content 0.52
exon number 19
gene id rgl2
representative False

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 19214486 ~ 19240639 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGCACCGACAGCAGGAACTGCGCCCAACGCGCCGCCCGCGCGTCACCAGCGCAGACCTCGCCGACACGCTCTGCTCGCCGATAAGCGCTGACGGGCGAAGCAGGAGGGGAGAGATATGGAGGGACAGAAACTCTGACTTCCGAGGAAGCCACACGCAGGGGCGGATGGACGCGATAGCGCTCTCCTAACAGCAGCGGCATCATGCTCCCTCGAAGTATGAAGACGTCTGGAGTAGAGCTGCCGGGAGTGGGCCCGAGAGAGGTGCCCCTCATCGGATACAGACCCCTACAGCCACAGGTGGACGGCCAGAAGGATCAGCTGGGGATGGAGAACGAAAACAGGGAGGAGGATCACACGCAGGGGGAGCCGTCCCCGATGAAGACCACATGGTACTGTCCACTGGACCTGTCCACTGTGTCTGAAATGGAGGAAGACGGTATCATCTACACTGTGGTGGTAAAACAAGGGCACAGTTCCCCCGCCCGCCCGCAGTCCTCAGCATCCCGCTCTCAGCACGTCAAAGCAGGGACAGAGGAAAAGCTGGTCCTCCATCTCCTTCATTCCTTCTCCATGGGCGACTCCTCCTTCATCTCCATCTTCCTCTCCACCTATCGCTCCTTCACCTCCACCCAGAGAGTGCTGGACATCCTGACAGACAGGTTGGGAAATCCTCCTGGGGAGAGCAATGGTAACACCCGTCAGATGTTTAACAAGGCGGTGTGTACAGTGTTCAGCACATGGATGAGCGACTATCCCGAGGACTTCCGCTCTCTGAACGACCCTTCCTGTCTGCTACGCTTGGCCCCCCTGCTTCCCACAGACACCTTGGGCGCAGAAATCAAAGGCCGACTGCTGAGGATCGCAGAGGAGCTGAGTGAGAAAACCCTGCTGTCCGGCTCACTATCAGATCCTACCAAAGGCATGACATTTCCTCCTGATCCCTCTGAGTTTGATGCCACCAGCATCCTGGGCTTTCCATCCAGTGTGATCGCAGAGCAGCTGACCAGGATCGAGACTGATCTGTTTCTGAAGCTGGTGCCCTATCACTGTCTGGGGTCTCTGTGGTCTCAGAGAGATAAGAAGGGCCAGGAAGGAGCGTGCTGGTCGGTCAGAGCCACTATCAAACAGTTTAATCGCTTAGCAAACGCCGTCACAGCCTCGTGTTTGTGGAACACGGGTCTGAAGAGCCAACAGAGGGCCAGACTGCTGGAGAAGTGGATCAGCGTCGCAGAGGCCTGCAGAAGCAGGAAGAACTTCTCCTCGCTGTACGCCATCCTGTCAGCACTGCAGAGCAACCCCATCCACAGACTGAGAAAGACCTGGCAGGAGACAGACAGAGAAGCTGTGAGGAGATACGAGGAACTTTCTGACATCTTCTCAGAGAAAGACAACTACTCCCAGAGCCGCGAGCTACTCAAAGAGGAGGGGACTTCCAAATTTTCAAACGCTGACACTAAAATCAACAACAGGAGATTCACGGGGAACGGCTTCATCAACCTCGATAAAAGACGACGGGAGTTTGAAGTCATCGCTCAAATTCGCCTCCTTCAGTCTTCATGTAGAAACAGCATTTTCAGAACGGACGAGACGTTCGTTCAGTGGTATCACAGCGTACCTACTCTGCGTGAAGAGGAAAGctataAGCTGTCCAATCAGATTGAAGCACCGGGCGAGCCGAGTCCTGGCCGAGGCCTGAATCCTACAGTGATCATCACACAGTGCCCAGACGCTCTCTCAGCCGTGGCAAATTCGACAATGGATGCTGATGGCATATTTGACTTCCCGTCTCCTGTCAATCACCTGCTCTCCAGGCTTTACAAGCATGTGAAATCTCCATCCGTTTCCTGTCTGGATGTTGATTCGTCACCGCCGCCCAATGATGCCACGCCCTCCGTCCTGACCACGCCCACTACAGCTGTCAAATCACATCGGCGATCCGTCTCCTGCGGCAACAACCCCACCAATAATAAGAAAGAGGCGGGGCCTGACATAAGAATCGTCAGGATACGGATGGATCTACACGATGGCAACTTATACAGAAGCATTCTGGTCACCAGTAATGATAAAACACCCACTGTAATCAGTTCTGCATTAGAGAAGCACAACCAGAATGCTCAAGAAGCCTCCAAATACGAGCTGATCCAACTACTGCCGGAGGGGAAAGAGTTATTAATACCACCCACAGGAAACGTCTTCTATGCCATGTCTTCAGCTAGCGTCGACTTCCTGttgaggagaagaggaggaaatACACCAACAGGGTCTCCGACTCTTGGCAACGAAACCAGCGCAACCTTTCCACGAATCAAAGCCAAGGGCAGAAGACTAGTCCGGACtctattttaacacaaaaacaggATATTCTCGTCCAAGTACTTTCaaaagaaaagacacaaaataCTCCATTCAGAGCTCTTTGGCGTAGAATCGACTCAAATAAGTCACGTTCATGAATTCTAATATTAGTAATTTGAGTGAAAGCTTGGTTGAAATGGCTCTAAGATGTTAGCTACTGCTAAACGTTGcactatttttgcatttcataaaCCCAAAATTAATTTCAAGACAAAATCCCGTACCTTTCGCTGATGCCAGCGTTTCCAGTACTTCCCCGTCTACCTCTAAAGCTTGCAGTCCATTCGTTACAgaattttctgcattattaatGAACATCAAACGGAGAGAGAGCAGCTAAAAGATCCCAGCATAATAAACACTTACCGAAGGT

Function

GO:

id name namespace
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168816 lncRNA upstream 8522 19202394 ~ 19205964 (+) True G114354
TU168784 lncRNA upstream 58419 19095730 ~ 19156067 (+) True G114328
TU168785 lncRNA upstream 58419 19095730 ~ 19156067 (+) False G114328
TU168765 lncRNA upstream 101759 19068602 ~ 19112727 (+) True G114316
TU168743 lncRNA upstream 234614 18977551 ~ 18979872 (+) True G114299
TU168807 lncRNA downstream 5294 19245933 ~ 19248320 (+) True G114345
TU168828 lncRNA downstream 39774 19280413 ~ 19283515 (+) True fxyd11
TU168830 lncRNA downstream 43139 19283778 ~ 19292881 (+) False fxyd3
TU168842 lncRNA downstream 67625 19308264 ~ 19309214 (+) True G114379
TU169042 lncRNA downstream 407265 19647904 ~ 19648864 (+) True G114520
XM_043260297.1 mRNA upstream 161870 19029066 ~ 19052616 (+) True ntrk1
XM_043260298.1 mRNA upstream 161870 19029066 ~ 19052616 (+) False ntrk1
XM_043260301.1 mRNA upstream 201247 19002551 ~ 19013239 (+) True LOC122360019
XM_043260295.1 mRNA upstream 228475 18984910 ~ 18986011 (+) True LOC122360015
XM_043260294.1 mRNA upstream 231381 18982089 ~ 18983105 (+) True LOC122360014
XM_043260222.1 mRNA downstream 10717 19251356 ~ 19259603 (+) True si:dkey-33i11.1
XM_043260223.1 mRNA downstream 10717 19251356 ~ 19259603 (+) False si:dkey-33i11.1
XM_043260226.1 mRNA downstream 10717 19251356 ~ 19259603 (+) False si:dkey-33i11.1
XM_043260224.1 mRNA downstream 10717 19251356 ~ 19259603 (+) False si:dkey-33i11.1
XM_043260228.1 mRNA downstream 10717 19251356 ~ 19259603 (+) False si:dkey-33i11.1
TU168498 other upstream 357056 18649391 ~ 18857430 (+) False G114131
TU168594 other upstream 374258 18827254 ~ 18840228 (+) False LOC122360132
TU168577 other upstream 393350 18809154 ~ 18821136 (+) True LOC122360692
TU168569 other upstream 453584 18758384 ~ 18760902 (+) False LOC122359904
TU168504 other upstream 534406 18679190 ~ 18680080 (+) False LOC122360853
TU168846 other downstream 86465 19327104 ~ 19328763 (+) True G114382
TU169046 other downstream 405319 19645958 ~ 19647806 (+) False LOC122360533
XR_006252832.1 other downstream 979005 20219644 ~ 20227077 (+) False hjv
unassigned_transcript_2160 other downstream 1898242 21138881 ~ 21138952 (+) True trnae-cuc_37
XR_006252812.1 other downstream 2609350 21849989 ~ 21872972 (+) False tgfbr2b

Expression Profile