RNA id: TU210079


Basic Information

Item Value
RNA id TU210079
length 3108
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G142260
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 26006269 ~ 26010388 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acacacacacacacacacacacacacacacacacacacacacacacacacacacacacaggtttttatactgtacagacagtatgtgttattgttctacatCTAAACCCactccttacaggaaactactcatatttttaaacaaaaaaacaccatttagtatgttttgaAGTCTTTCATGGGGATATTGTCCGTGTCATAATCCACCTTCAGATTGTTGTACCTCTGTCACACACATAAACCACAacaaccagcacacacacaccctttatGTTTGTTGAGTCTGTCACTCTGTATCAGAGGAGACACAGGCTGGGCCgtggttgccatggtgaccTGGATAGTGTGTCTATGGGATGCTGAGCAGCCTCACGTCTCCATGGTACCCAGAAGCCTTTGGGATGCAGCACAAAGCTTGCAGCATCACTGCCTGTGTCTCTCAGACTGGATCTGCTCTCTCAGTTCACTGACCCACATTTCTATCAATGAATATCATGAAATACGGCAGAATTATGTTCGTATATCCATTTATTAGGAGATCAGGAGGacgtttcttcatcagatctggagtgatgtctcagcaatggaagtgaatgggtgccgtcggaatgagagtctgataaaaacatcagaataatccccagcgctccggtccatcagggaacatctggagaagatcaaactaatccagcatggAGACTTCAAGCCGTTGCTTCTGGATGAAATACAAGCTCATCATTACCATCCCAGTTAACAAAAAATAgattccaaaaatattttctctaatGTTGCAAATTtctgaatgtatttaaatctcGGTTGCGTTAACATTATGGAAGATTCCATTTAAGCAAACATTATGGGAACGTTGCTTCTGAATGCTCTCTCAACGTTCAGaggtcttctccagatgttcgctgatggaccggagcgctgtgaCGTTTTTAGCAGACTCtcagtctgacggcacccattcacttccattaccgAGACCCTGATGCAGTGCTGAGTAGAGGGTGCCTCGTCAGTCGCCGGTGTCCTGTCCTACTGGACTCATAACCTCATTATTGATCCTCACAGCAGCTTCATCCAGTCTGACTGAAAACTGATCATCACCGCTCATCTAAAACAACTAACTATGAGAAACAAAACCAAGTGTTTAATCAGCTGGGGCTTAAAGACGAATGATACTCAGTGATAATATCCACACGACCTCGCTGACTTCGGTGGTTAGTTTTGTAACGGTGATATTCTCCTGTTTTTACTGTGAACATGTTTTAGATAAAGTGCTACAGAAAGCAGTGACTTGACTCATAAACACAGAAGAGCACGAGCTCCTCAATTAAAAGAGTGTGTTTTACAAGGAAGCAGGTATTTCaacttttaaataaaggctATAGAACCGTTTccggttccacaaagaaccatctctttctcaGCTTTTTAGAATCTGAAGAACTCAAAGAAGCTCTGGTGAAACACAAACGTTCTTCAGATGTTCTAAAGATTCTTCACGGAACCATTCAGACAAACAGCTGCTGCTCAGAAACTCTTTCCTCTTCTTTCTAAGTATCCTTTCATCAAGAAGCGTTCATGTGACACGTGCAATGATTTAAGACGTTAAGCCTTGTTTCCTACGAAAATCtacattgtgtttgtttttgcttaaaatgaaGAGAAATATCAGCCAGTTCAAAGACACCACTGGTAGATATTTCTGCTCGTTTCAAGTAAAAAGGAACAAAACATTGCCTTTTTTTTCAATAGAAAAGGCATCGTACAGTACACTCATGATCTGGAGACGTGTTCCTGACCAGTGGAGGTCAAATCTGATCAGAGTTAAACCACAGGAACGGTGTGTTAGATTACTCCATGCatccattacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcttccaTGGTAACAGCGCGTCTGTATCCTCCAGCCTCTGAGATCTCCAGAACAAAAGAGGATCGGTGTGAAGCTGTGAATCAGGCCTTGATCCGCACGTTTCCGGCGGGATTCGGGATCCGGAGGCGAGGAGGACGTACCTGATCTTGATGTCGGCGAGCGGCGCTCCGGGCTCACAGTAGATCTGTGGGAAATAGAAGCGGTGAGCTGGGACGTTAATATCCATGATCATATCAGAGGAACAGGTGCTCCAGGAatcctgcttctctctctctctctctctctctgcggcTCGGCTCCCCTTcccctcttcctcttcctcttcctctccctctccctcttcctcttcctcctctctcgCCGCTAGCGCTTCAGAAAGAGCATCTCAGTCGCCTCGCATCCGCCGCTGCATTTCCTGGGCGCTCTTCTTCAGATAAAATCACAAGGAAGCTCTGCGTGTGAAGACGAGCGTTTCTCAATGAAGCGGCGCTGATGTCATCCTTTGTCCGTGACAGCAGCAGAGACGAGCTCAATGAAGGGATGCTGAGTGATGCAGAGGCCGTCTGACCCCGCCCCGCCGCCGCGCCATTGGCTGAGAGGACTACGAGGCTCCTCCCACTGCTCTCCAGTGAGTATCCTCTCATCAGCCCCTCCCCACTCACActgatgctctctctctctctcgggatggaaatcataattaaaatgaaaaggctGCAAACTGATTAGGGCTGAATTAAAGGGGAAATGAAACACGCTCTGAAACACTAACTAGTGCTCAAACAACATCTAACAGAGGActaagagagagagagagagagagagagagagagagagagacagagagagagagagactgctgTCTGTTAGATGACACACTGACACAATTACTGTAAAGCATATATTGATTTCATAAAACAGATGACCAGAAATAATGTGTGTAGAGGTAGAATGTCTCACACACTCATCTAAACAGGTATTATGAACTGAACACACAGTGTGACCTGTGACCTGTACAGTGAACATGTGACTACAGAacatgtgtgtgatgtgtgcaTTGATCGGTATGTTCAGAAAtcaaaacactcacacacacacacacgcacacacacacactcacacactcacacacacacacacacacacacacacactctcacacactcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210004 lncRNA downstream 141190 25838372 ~ 25865079 (-) False G142201
TU209997 lncRNA downstream 141190 25863433 ~ 25865079 (-) False G142201
TU210005 lncRNA downstream 141190 25863433 ~ 25865079 (-) True G142201
TU210006 lncRNA downstream 141190 25863658 ~ 25865079 (-) False G142201
TU210002 lncRNA downstream 141190 25863870 ~ 25865079 (-) False G142201
TU210080 lncRNA upstream 262 26010650 ~ 26012248 (-) True G142261
TU210062 lncRNA upstream 6983 26017371 ~ 26033198 (-) True G142245
TU210059 lncRNA upstream 8331 26018719 ~ 26055565 (-) True G142242
TU210064 lncRNA upstream 11099 26021487 ~ 26077073 (-) True G142247
TU210159 lncRNA upstream 78068 26088456 ~ 26090453 (-) False pgfa
XM_043220153.1 mRNA downstream 29441 25963983 ~ 25976828 (-) True magl
XM_043218762.1 mRNA downstream 46567 25944134 ~ 25959702 (-) True LOC122324391
XM_043218661.1 mRNA downstream 71197 25889475 ~ 25935072 (-) False pak5
XM_043218662.1 mRNA downstream 79319 25889475 ~ 25926950 (-) False pak5
XM_043218660.1 mRNA downstream 79650 25888169 ~ 25926619 (-) False pak5
XM_043220357.1 mRNA upstream 26006 26036394 ~ 26049767 (-) True lrfn5b
XM_043218888.1 mRNA upstream 41818 26052206 ~ 26054369 (-) False LOC122324466
XM_043220296.1 mRNA upstream 62017 26072405 ~ 26079546 (-) False znf410
XM_043220293.1 mRNA upstream 62017 26072405 ~ 26079546 (-) False znf410
XM_043220295.1 mRNA upstream 62017 26072405 ~ 26079504 (-) False znf410
XR_006247208.1 other downstream 252261 25750917 ~ 25754008 (-) False LOC122324601
XR_006247207.1 other downstream 252265 25752541 ~ 25754004 (-) False LOC122324601
XR_006247206.1 other downstream 252303 25752541 ~ 25753966 (-) False LOC122324601
XR_006247205.1 other downstream 252592 25750923 ~ 25753677 (-) False LOC122324601
XR_006247204.1 other downstream 252592 25752541 ~ 25753677 (-) False LOC122324601
TU210061 other upstream 40441 26050829 ~ 26054469 (-) True LOC122324466
XR_006247179.1 other upstream 41818 26052206 ~ 26054369 (-) False LOC122324466
XR_006247180.1 other upstream 41818 26052206 ~ 26054369 (-) False LOC122324466
XR_006247182.1 other upstream 41818 26052206 ~ 26054178 (-) False LOC122324466
XR_006247181.1 other upstream 41818 26052206 ~ 26054178 (-) False LOC122324466

Expression Profile