RNA id: TU210064


Basic Information

Item Value
RNA id TU210064
length 1177
lncRNA type read_through
GC content 0.45
exon number 2
gene id G142247
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 26021487 ~ 26077073 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cacacacacacacacacacacacacactcacactcacacacactcacacactcactcacacacacacactctcacacacacacacactcacacacttcaaacacactctcacacacacacactctcacacacacacacacacacacacttcaaacacactctcacacacacacactctctcacacacacacacacacacacttcaaacacactctcacacacacacacgttgtctCACCTGGACACCAGTGAGGATCTCTCGGCTGAATTGGCTCGGTCCCAGGGTTTCTTCACTGCGTCTGTagaacgacacacacacacacacacacacacagagcagagaTTAACCTCGTGGtcctcagacacacacactcttcttcAGAACAACACGTACCTGAGGCGTTCTGTCCACGAGAACCCGCATCGTCCTGAAACACAGTAGAATCAATCCCAGAAAACAACaggctttcacacacacacacccacacacacacacacacacacccacatacacacacacacacacacacacacacatacacacacacacacacacacacacacacacacacacacatacacacacacacacacacacacacacacacacacacacacacactcatctccCGCTGAGCGTCTTCACACTCGTTAATGAAATATCCTGCAGGTGTGTATTTAGTATActacacctgtgtgtgtgttcattttacaGAAGAAGAGCTGAAGGACAATTAAAGACACGCTTCATATATCTGCTAAAGATTTAAAGATCATACTATCCTCTAAAACtctgaaatgaaaacatgaatatattactGCTGTAAAGTAGAAGTGTCCTGTGACTTTAGTTCTAAGAGTTCTAAGCtacacttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcaggcTGAAAGACTTTCACTGAATCAAGTTTTATTCAGATCTCCGTCGGGGCTGCACTCACGTTTTGGCTTTCTCCGTCCTTCTTCTCGTCTGCTGCTTTCCGTCTGTGATGAgaagaagagtgtgtgtgtttactgcagTGTACTgatcatcagtgtgtgtgtgtgtgtgtgtgtctgttatgtgtgtgtgtgtgtttgtctaatatgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtatgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210080 lncRNA downstream 9239 26010650 ~ 26012248 (-) True G142261
TU210079 lncRNA downstream 11099 26006269 ~ 26010388 (-) True G142260
TU210005 lncRNA downstream 156408 25863433 ~ 25865079 (-) True G142201
TU210159 lncRNA upstream 11383 26088456 ~ 26090453 (-) False pgfa
TU210160 lncRNA upstream 11383 26088456 ~ 26090453 (-) False pgfa
TU210161 lncRNA upstream 11383 26088456 ~ 26090453 (-) False pgfa
TU210146 lncRNA upstream 72818 26149891 ~ 26159582 (-) False G142273
TU210125 lncRNA upstream 91461 26168534 ~ 26174879 (-) True G142273
XM_043220153.1 mRNA downstream 44659 25963983 ~ 25976828 (-) True magl
XM_043218762.1 mRNA downstream 61785 25944134 ~ 25959702 (-) True LOC122324391
XM_043218663.1 mRNA downstream 94869 25889475 ~ 25926618 (-) False pak5
XM_043220270.1 mRNA upstream 6016 26083089 ~ 26087970 (-) True cipcb
XM_043218801.1 mRNA upstream 11342 26088415 ~ 26096971 (-) False pgfa
XM_043218800.1 mRNA upstream 11342 26088415 ~ 26096971 (-) False pgfa
XM_043218802.1 mRNA upstream 11342 26088415 ~ 26096971 (-) False pgfa
XM_043218796.1 mRNA upstream 11342 26088415 ~ 26096971 (-) False pgfa
XR_006247208.1 other downstream 267479 25750917 ~ 25754008 (-) False LOC122324601
XR_006247207.1 other downstream 267483 25752541 ~ 25754004 (-) False LOC122324601
XR_006247206.1 other downstream 267521 25752541 ~ 25753966 (-) False LOC122324601
XR_006247205.1 other downstream 267810 25750923 ~ 25753677 (-) False LOC122324601
XR_006247204.1 other downstream 267810 25752541 ~ 25753677 (-) False LOC122324601
XR_006247174.1 other upstream 11342 26088415 ~ 26096971 (-) False pgfa
XR_006247173.1 other upstream 11342 26088415 ~ 26096971 (-) True pgfa
TU210175 other upstream 108587 26185660 ~ 26187919 (-) True G142281
TU210168 other upstream 154951 26232024 ~ 26234245 (-) True G142278
unassigned_transcript_2516 other upstream 537570 26614643 ~ 26614730 (-) True trnas-gcu_32

Expression Profile