RNA id: XM_043218762.1


Basic Information

Item Value
RNA id XM_043218762.1
length 4255
RNA type mRNA
GC content 0.58
exon number 30
gene id LOC122324391
representative True

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 25944134 ~ 25959702 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TccaatagttgtatctcagagaAATACtcagttaaaaacaaacactgccaTTAAGAGATTTTATGATCCACgttattctttgttttatttcaagtgACAATCTTTTGCTGTGGTTTTAGTTAATAACAGTCATCAGCTGTAATCATGAATGAAGATCTTCACCTCTCGGGGCGTGTCCTCGTGACGCTCATGAATATGTAATCAGGGCGACGCGTCACAGCGGCCAATCAGACGTGAGCGTGCTGGAGTCCCGCGCGGAGTTTTCTCGGACTTCTTCTCCTCTCTGGAGCGAATGAAGACCGGACTCTGAGGGACATGGAGGCGTTCGCCATCAAGAGCCGCCTCAGGAGCCTCCTGCGCTCGCCGTCCATCAAACTCAGGAAGAACCGCCATAAAGAGAGTCTCTCCGGAAAGGTGACTCTAGAGAAGGTTCTGGGCATCACGACCGCAGGAAACAGTGGTTTAACATGTGATCCGTGTTCAGGAACCGTGGCCTATCCGGCCGGGTGTGTGGTTGTGTTACTGAACCCGgccaaaaacacacagcagcatCTCATCAACTCGTCCAGGAAGGCCATCAGTGCTCTGGCGTTCTCGTCGGACGGCCGGTATCTGGTCACTGGAGAGagcgGTCACCAGGcggcggtgtgtgtgtgggacgtGAGCGAGGGCTCTCTGGTCTCGGAGCTGATGGAGCACAAGTACGGCGTGTCCTGTGTGGCCTTCTCCCCGAACGACAAACACATCGTGAGCGTCGGGTCGCAGCATGACATGAGCGTCCATCTGTGGGCCTGGAAGAAGAACGCTCTGATAGCCGTGAATAAAGTGTCCAGTAAAGTGACGTCCGTGTCCTTCTCCGAGGACGGCAATCATTTTGTGACGGCGGGGAACAGACACGTGCGCTTCTGGTATCTAGAACCGTCTCACGCCGATCAGCGGGCGTGTCCGGTGCCTCTGACGGGTCGCTCCGGGCTCCTCGGGGAGCTGCACAATAACTTCTTCTGTGCCGTGGCGTGTGGACGGGGATCGAGGTCCAGCAGCACCTTCTGCGTCACGGCGTCCGGACTGCTCTGTGAGTTCAACAGACACCGGGTCCTGGACCGCTGGGTCCATCTACAGacggGTTCTGCTCACTCTCTGGCCGTGACGGAGGACCTGATCTTCTGCGCGTGTTCGAGTGGAGTCGTGCGAGTGTTTGGAGCGTCTGACCTGAGCTTCATCTGCACCCTGCCCCGTCCTCATCACCTGGGCACCGACGTCTCCAGCGTCACACACGCCGGTCATCTGTTCAGCAGAAGCCTGCACGCCCGATACCCAGCCTCGGTGGcggtgacctttgaccccgtCCACCGCTGGCTGTCCTGTGTGTATGATGACCACAGCTTATACGTGTGGGACACACGAGACCTGTGCAAAGTGGGCAAAGTTCACTCGGCGCTGTATCACTCGGCCGGTGTCTGGGATCTACAGcatgtttgtgATCTGCTCAAACTCCAGACGTGTTCTAGGAGCAGCGAGGGCTCTGCTTCGTTCCTCACGTGTTCTTCAGACGGCTCCGTGCGTTTCTGGACTTCAGACGGTCTTCGCTGCAGGAACGTCTTGAGTAACGATCTTCATCACATCTTCTACGTGAACGCCAGTGCTCTGCCGGAGACGGAGGGAACGGCCGAGGGATCTAGCTCAATCAGAACCATCTGCATCAGTCCAGACGGGAGACACCTGGCGTCTGGAGACAGAAACGGCACACTCAGGATTCATGATCTCAAGTGTATGAAGGAGCTGCTGAAGGCAGAAGTCCATAACTCTGAGATTGTGTGTCTGGAATACTCCAAACCTGCgtcaggcATGAATCTGCTGGTCACTGCGGGTCGAGATCGTCTGATCCGTGTTCTGGATGCTGATGAAGACTACGGTCTGCTGCAGACGCTGGATGATCACTCGTCCTCCGTCACGTCCGTGCGCTTCGCCGCCGGAGGAGACGGGAAGCTGCGGATCATCAGCTGCGGAGCGGATAAGAGCGTTTACATCCACACCGCTCTCAGGACGGCCAGAGGAGCTGAGTTCAAGCGGACTCATCATGTGGTTCGTAAAGCGACTCCCAACGACATGGACGTGGATCCCACGTGTAAATACGCGGCCGTCGGCTGTCAGGACCACAGCATCCGAGTCTTCAACATCAGCAGCGGCAAACAGAAGAGATGCTTCAGCGGCGCTCGGACCGAAGACGGAGCTTTTCTGAAGGTTCAGATTGACCCGTCAGGTCTGTTTGTAGCCTCCAGCTGCTCTGAGAAGAACATCAGTCTGATTGACCTCCAGACCGGAGAGAGACTGGCCAGCGCCTTCGGACACTCGGAGCTCATCACAGCTTTGAGGTTCAGCAGTGACTGCAGGCACCTTCTCTCCTCTTCTGCTGACAGTTGTATCTTTGTGTGGCGTCTCGCTCCTGAACTCACCATCAACATGAAGGAGAGACTTTCTGTGATCAGACACAGTCGCGGCGCATCAAGCGCTAGGAATCCCTTCAGacGGTCCTCCGTGACTGGGTTCATGCTGCACAGATCCACATCCATCATGAGCTGCTCGTCTGAGAGTGAccgagaggaagaggaggaggaggaagaggaggaagacaTGAGGACAGCTGAAGAGACGGAGAGACCGGAGGACATCCACCAGAGGACCGAGGACAGCGTTGATGAGGAGACCGGTGGATCTGATGAAATGCACTGGCGTCCAGTGAAGGCTGCGTCTTCAGACTCGTCTTCTTCTGCGGTGGTGTCTCGTCCTCGCCGGCGCTGGTCCTGTCGCGTGGGCTCTCTGGAGCTCATGGTGAAGTCCATGCTGGAGCTCAGACAGCTGGATTCTCTCTCAGAAGCTCCAGATCAGAGCAGAAGCTGCGCAGACCGTCTGCGTGACGAGGATCGATGCAGCACTTCCAGTCTGCAGGATTGTCGTCTCCGTCGTCCTCGTCGCTCGGCCTGGCTGCTCCCGGCCGGCGCTCCTGAACCCGAGGGAGTGCTTCTGTACCCGGATCACTGTCCCAGCACCAGCAGTCTGCCCGGGACGTCCTACCAGATACAGACTCGGTCTGAGAGCCTCAAGGAGAGAGCAGAAGAAGCCCAGAGTCCTGTCAGCGGAGCATCCATGGGCTACTGCAGCGGAGGATCCAGCCCAGACCCCCGGCACCTCGACACGGGCTCTGATGAAGAATCCTGTGACACACGGTCCATCTGTGGTTCTGAGAGTGTTCCTGAAGACGTCTGGAGGAGCTCGGAGACGCTGAGCGATGCAGGGTCTCAGACCACAGCAGAAGGAAGTTTCTCTTCAGGTTTGCACGGCCAGAAGTTCTCTAGCAGATCAGTCAGCGGCCCCGGGCCCCTGAGGAGCCACCCGTACCTGAGCAGCTCTGCGGCTGGGCTCCAGAAGTCAGCTTCAGCACACAGCCGGAGCCACGAGCGCAGGTCCCTGGCGCGTCCGGTCCGGTCCAGACTGAGTCTGGAGAAGGTGGAGAGCCGCTCCTACATGAGTCCCACCACCAGCTCCAAGGCCAAAGCCAGCCGTCCCTGTGAGAGCCTGAGCGTCCTGACCAGCAGACCCCCCCGCACGCCGCCTCAGGAGCCCTGGACCGACCCCagctcttcatcatcatcatcatcctcctcctcggCGATGAAGACGCCTGCCGCTCCTGATGATGAAGGTGTGAAGCGCCGGCGCTCTTCCTCCGTCCTGCTGCTGTCTGTGCCActgcttcttcctcttcctcactcGTCTGGTCTCCTTCCTCTCTGCTTCTCtcccttcttctctctctccttcggCCGGCGGCGTGACTCGGATGGGTCGGTCAGTCTGGAGCTCTGCCGGCGGGCAGCAGAGGACCTGTGCAGCAGCGTGAGGTCAGCGACCCGGATCTACAGGACGCTGAGCTCCCATGATGCCGAGCGCAGCGCCGAGCAGCAGCAGATGTGTCAGCTGATGTCCGAGGCTCTGCTGCTGGTGCGCTCGGAGCTGGACTCGGTGTCCGGACCCCAGAGGAGAGAAGAGGGACACGAGACGCTCGCTTTACTCGAGCAGTACTCACAACTACTGCTGCGCTCCGTCGAGAAGAGACTCCACCAGAACACATAGAGCTACCACACCgctgagagagagtgtgtgtgtgtgtgtgtgtgtgagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210004 lncRNA downstream 79055 25838372 ~ 25865079 (-) False G142201
TU210079 lncRNA upstream 46567 26006269 ~ 26010388 (-) True G142260
TU210080 lncRNA upstream 50948 26010650 ~ 26012248 (-) True G142261
TU210062 lncRNA upstream 57669 26017371 ~ 26033198 (-) True G142245
TU210059 lncRNA upstream 59017 26018719 ~ 26055565 (-) True G142242
TU210064 lncRNA upstream 61785 26021487 ~ 26077073 (-) True G142247
XM_043218661.1 mRNA downstream 9062 25889475 ~ 25935072 (-) False pak5
XM_043218662.1 mRNA downstream 17184 25889475 ~ 25926950 (-) False pak5
XM_043218660.1 mRNA downstream 17515 25888169 ~ 25926619 (-) False pak5
XM_043218663.1 mRNA downstream 17516 25889475 ~ 25926618 (-) False pak5
XM_043218659.1 mRNA downstream 17516 25889475 ~ 25926618 (-) False pak5
XM_043220153.1 mRNA upstream 4281 25963983 ~ 25976828 (-) True magl
XM_043220357.1 mRNA upstream 76692 26036394 ~ 26049767 (-) True lrfn5b
XM_043218888.1 mRNA upstream 92504 26052206 ~ 26054369 (-) False LOC122324466
XM_043220296.1 mRNA upstream 112703 26072405 ~ 26079546 (-) False znf410
XM_043220293.1 mRNA upstream 112703 26072405 ~ 26079546 (-) False znf410
XR_006247208.1 other downstream 190126 25750917 ~ 25754008 (-) False LOC122324601
XR_006247207.1 other downstream 190130 25752541 ~ 25754004 (-) False LOC122324601
XR_006247206.1 other downstream 190168 25752541 ~ 25753966 (-) False LOC122324601
XR_006247205.1 other downstream 190457 25750923 ~ 25753677 (-) False LOC122324601
XR_006247204.1 other downstream 190457 25752541 ~ 25753677 (-) False LOC122324601
TU210061 other upstream 91127 26050829 ~ 26054469 (-) True LOC122324466
XR_006247179.1 other upstream 92504 26052206 ~ 26054369 (-) False LOC122324466
XR_006247180.1 other upstream 92504 26052206 ~ 26054369 (-) False LOC122324466
XR_006247182.1 other upstream 92504 26052206 ~ 26054178 (-) False LOC122324466
XR_006247181.1 other upstream 92504 26052206 ~ 26054178 (-) False LOC122324466

Expression Profile