RNA id: TCONS_00009964


Basic Information

Item Value
RNA id TCONS_00009964
length 1761
RNA type mRNA
GC content 0.51
exon number 11
gene id XLOC_005150
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 6160446 ~ 6177894 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAAACCAATCAAAAATGTGGGGATGGACTGACTGGCACGCAGAAAGAAGCTGCGCTGCGAGCTCTTATCCAGCGCACTGGATATCACATACACCAGGAAAATGGCCAGAGGAGATACGGTGGCCCACCTCCTGGATGGGAAGGCTCACCTCCCGAAAGAGGCAGTGAGATTTTTGTGGGAAAGCTTCCTCGAGACCTCTTTGAGGATGAGCTGGTGCCACTCTGTGAAAAATTTGGCAAAATTTACGAAGTACGGATGATGATGGACTTCAATGGCAACAATCGAGGCTATGCATTCGTTACCTTCTCCACAAAACAAGAAGCTAAGAATGCCATGAAACAGCTCAACAACTATGAAATCCGGAATGGAAGGCTTCTGGGCGTGTGTGCAAGTGTAGACAACTGTCGTCTATTTGTGGGTGGTATTCCAAAAACCAAAAAGAGAGAAGAGATCCTGGCAGAGATGAAGAAAGTGACGGATGGTGTCTTGGATGTCATCGTTTACCCAAGTGCTGCTGACAAGGCCAAGAACCGAGGTTTTGCATTTGTGGAATATGAGACCCACAGAGCTGCCGCCATGGCCAGGAGGAAACTGCTCCCAGGAAGGATTCAGCTGTGGGGTCATCCTATTGCAGTCGACTGGGCTGAACCTGAAGTGGAGGTAGACGAGGACACCATGGCCACAGTGAAGATTCTCTATGTTCGTAATCTGATGTTGCCCACCACAGAGGAGACTATTGAAAAAGAGTTCAATAGCATCAAACCTGGTGCTGTTGAACGTGTGAAGAAGATCCGAGATTACGCATTTGTTCATTTCTCTCAAAGAGAAGACGCCATCAATGCCATGAATGCACTGAATGGAAAGGTTATTGACGGTTCACCAATTGAAGTCACACTAGCCAAGCCCGTGGACAAGGACAGCTACGTGCGGTACACCCGAGGCACAGGGGGCCGTGGTGGTACTGTTCTCCAAGGAGACTATGCTTACACTGTGGGCCAGATGTACGATCCCTCAGCTGCTTACCTAGGAGCACCAATATTCTACGCCCCCCATGCATACGCAACAATCCCTAACCAGTTTCGCTTCCCCAGTACCAAGGGGCAAATGAGTACCAGGGGTCTTGTCCGGACACCCTCAGTGAGAGGGGCAGCGGGCGTACGTGGTTTGGGCGGGCGAGGATATCTTGCCTATGCAGGTGTGGGTCGCGGCTGTGGCACATACCAACTCAAGACAGACAAACGCCCCGACGACAAGCTCTATGACCTTCTTCCTGGCATGGAGCTCACGCCCATGAACCCAGTCACTCTGAAGCCCCAAGGCATCAAACACGCCCCACAGATCTTGGAAGATATTTGCCAAAAGAATAACTGGGGTCAACCTGTTTACCAGCTTCACTCTGCTATTGGACCAGATCAGAGGCAACTGTTCCTTTATAAAGTCACCATCCCTGCTCTTGCTACTCAATACCCAAATATACACCCGTTCACCCCTGCCAAACTCTGTGCATCGATGGATGAGGCAAAACTGCACGCAGCCGAGCACACGCTGCAGATCCTCGGTGTTCAGACAGAGGGTGCTGACGCCTCTGCTGCTGCGGCTGTTGCTGCTGCATTCCCAGGTTATGCAATTGCCAGCACCACTGGCACTCAGCTGAAACAGGCCGTTTCGTTGGGTCAGGATTTGACTGCCTATGCAACCTATGAGGGTTACCCTGCTTTTGCTGTGGCAGCCCGTGGCGATGGATATGGAGTGTTTTAA

Function

GO:

id name namespace
GO:0016556 mRNA modification biological_process
GO:0005634 nucleus cellular_component
GO:0030895 apolipoprotein B mRNA editing enzyme complex cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003727 single-stranded RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-060824-3 Predicted to enable mRNA binding activity. Predicted to act upstream of or within mRNA modification. Predicted to be part of apolipoprotein B mRNA editing enzyme complex. Predicted to be active in nucleus. Is expressed in liver. Human ortholog(s) of this gene implicated in gout. Orthologous to human A1CF (APOBEC1 complementation factor).

Ensembl:

ensembl_id ENSDART00000185434

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011086 lncRNA downstream 5162 6151831 ~ 6155959 (-) False XLOC_005148
TCONS_00011087 lncRNA downstream 5162 6154582 ~ 6155959 (-) True XLOC_005148
TCONS_00011085 lncRNA downstream 11435 6142282 ~ 6149686 (-) True XLOC_005147
TCONS_00011084 lncRNA downstream 13216 6142282 ~ 6147905 (-) False XLOC_005147
TCONS_00011083 lncRNA downstream 14825 6142282 ~ 6146296 (-) False XLOC_005147
TCONS_00011088 lncRNA upstream 134669 6306823 ~ 6493066 (-) False XLOC_005151
TCONS_00011089 lncRNA upstream 176549 6348703 ~ 6363580 (-) True XLOC_005152
TCONS_00011090 lncRNA upstream 200088 6372242 ~ 6493089 (-) False XLOC_005151
TCONS_00010798 lncRNA upstream 212561 6384715 ~ 6493092 (-) False XLOC_005151
TCONS_00011091 lncRNA upstream 215681 6387835 ~ 6493092 (-) False XLOC_005151
TCONS_00009962 mRNA downstream 1576 6158225 ~ 6159545 (-) True XLOC_005149
TCONS_00009961 mRNA downstream 97793 6049355 ~ 6063328 (-) True XLOC_005146
TCONS_00009958 mRNA downstream 127267 6023490 ~ 6033854 (-) False XLOC_005145
TCONS_00009966 mRNA upstream 370635 6542789 ~ 6551681 (-) True XLOC_005153
TCONS_00009967 mRNA upstream 394079 6566233 ~ 6818676 (-) False XLOC_005154
TCONS_00009968 mRNA upstream 394169 6566323 ~ 6880694 (-) False XLOC_005154
TCONS_00009969 mRNA upstream 708444 6880598 ~ 6905375 (-) True XLOC_005154
TCONS_00009970 mRNA upstream 977294 7149448 ~ 7157527 (-) True XLOC_005158
TCONS_00009948 other downstream 742781 5399680 ~ 5418340 (-) False XLOC_005137
TCONS_00009917 other downstream 1859745 4298227 ~ 4301376 (-) True XLOC_005113
TCONS_00009915 other downstream 1859746 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009914 other downstream 1862837 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009912 other downstream 1874641 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009972 other upstream 1051635 7223789 ~ 7235103 (-) True XLOC_005159
TCONS_00009977 other upstream 1330808 7502962 ~ 7503098 (-) True XLOC_005164
TCONS_00009989 other upstream 2271750 8443904 ~ 8444021 (-) True XLOC_005174
TCONS_00009996 other upstream 2688039 8860193 ~ 8860307 (-) True XLOC_005180
TCONS_00010002 other upstream 2877378 9049532 ~ 9051178 (-) False XLOC_005182

Expression Profile

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