RNA id: TCONS_00009989


Basic Information

Item Value
RNA id TCONS_00009989
length 118
RNA type rRNA
GC content 0.56
exon number 1
gene id XLOC_005174
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 8443904 ~ 8444021 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTAGCTgccagctagctctctgcaactctcacatggtcgcctgctgaagctaagcagggctgcgcctggtcagtacctggatacgagaccacatgggaagctagtttgctgctggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000170618

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011098 lncRNA downstream 49259 8388330 ~ 8394645 (-) True XLOC_005173
TCONS_00011096 lncRNA downstream 370641 8003509 ~ 8073263 (-) True XLOC_005170
TCONS_00011097 lncRNA downstream 397431 8039984 ~ 8046473 (-) True XLOC_005171
TCONS_00010800 lncRNA downstream 433344 8003509 ~ 8010560 (-) False XLOC_005170
TCONS_00009987 lncRNA downstream 589688 7801194 ~ 7854216 (-) True XLOC_005169
TCONS_00011099 lncRNA upstream 33438 8477459 ~ 8480708 (-) True XLOC_005175
TCONS_00011100 lncRNA upstream 129912 8573933 ~ 8575025 (-) True XLOC_005178
TCONS_00009995 lncRNA upstream 146908 8590929 ~ 8595364 (-) True XLOC_005179
TCONS_00010000 lncRNA upstream 552014 8996035 ~ 9087566 (-) False XLOC_005182
TCONS_00010003 lncRNA upstream 619654 9063675 ~ 9084568 (-) True XLOC_005182
TCONS_00009988 mRNA downstream 372935 8064029 ~ 8070969 (-) True XLOC_005172
TCONS_00009983 mRNA downstream 589688 7757663 ~ 7854216 (-) False XLOC_005169
TCONS_00009986 mRNA downstream 619474 7792935 ~ 7824430 (-) False XLOC_005169
TCONS_00009982 mRNA downstream 619613 7757663 ~ 7824291 (-) False XLOC_005169
TCONS_00009985 mRNA downstream 636606 7783261 ~ 7807298 (-) False XLOC_005169
TCONS_00009990 mRNA upstream 39817 8483838 ~ 8486330 (-) False XLOC_005176
TCONS_00009991 mRNA upstream 40829 8484850 ~ 8504278 (-) True XLOC_005176
TCONS_00009992 mRNA upstream 65619 8509640 ~ 8511185 (-) True XLOC_005177
TCONS_00009993 mRNA upstream 137854 8581875 ~ 8817999 (-) False XLOC_005179
TCONS_00009994 mRNA upstream 138734 8582755 ~ 8817802 (-) False XLOC_005179
TCONS_00009977 other downstream 940806 7502962 ~ 7503098 (-) True XLOC_005164
TCONS_00009972 other downstream 1208801 7223789 ~ 7235103 (-) True XLOC_005159
TCONS_00009948 other downstream 3025564 5399680 ~ 5418340 (-) False XLOC_005137
TCONS_00009917 other downstream 4142528 4298227 ~ 4301376 (-) True XLOC_005113
TCONS_00009915 other downstream 4142529 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009996 other upstream 416172 8860193 ~ 8860307 (-) True XLOC_005180
TCONS_00010002 other upstream 605511 9049532 ~ 9051178 (-) False XLOC_005182
TCONS_00010005 other upstream 673031 9117052 ~ 9117178 (-) True XLOC_005184
TCONS_00010008 other upstream 901343 9345364 ~ 9345485 (-) True XLOC_005187
TCONS_00010009 other upstream 916295 9360316 ~ 9363873 (-) False XLOC_005188