Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00009991 |
| length | 853 |
| RNA type | mRNA |
| GC content | 0.57 |
| exon number | 2 |
| gene id | XLOC_005176 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 8483838 ~ 8504278 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0021575 | hindbrain morphogenesis | biological_process |
| GO:0048568 | embryonic organ development | biological_process |
| GO:0021654 | rhombomere boundary formation | biological_process |
| GO:0048932 | myelination of posterior lateral line nerve axons | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-980526-283 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within embryonic organ development and nervous system development. Predicted to be located in nucleus. Is expressed in several structures, including nervous system; neural crest; neural keel; neural plate; and neural rod. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 1D; Charcot-Marie-Tooth disease type 3; Charcot-Marie-Tooth disease type 4E; and motor peripheral neuropathy. Orthologous to human EGR2 (early growth response 2). |
| ensembl_id | ENSDART00000135865 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00011099 | lncRNA | downstream | 4142 | 8477459 ~ 8480708 (-) | True | XLOC_005175 |
| TCONS_00011098 | lncRNA | downstream | 90205 | 8388330 ~ 8394645 (-) | True | XLOC_005173 |
| TCONS_00011096 | lncRNA | downstream | 411587 | 8003509 ~ 8073263 (-) | True | XLOC_005170 |
| TCONS_00011097 | lncRNA | downstream | 438377 | 8039984 ~ 8046473 (-) | True | XLOC_005171 |
| TCONS_00010800 | lncRNA | downstream | 474290 | 8003509 ~ 8010560 (-) | False | XLOC_005170 |
| TCONS_00011100 | lncRNA | upstream | 69655 | 8573933 ~ 8575025 (-) | True | XLOC_005178 |
| TCONS_00009995 | lncRNA | upstream | 86651 | 8590929 ~ 8595364 (-) | True | XLOC_005179 |
| TCONS_00010000 | lncRNA | upstream | 491757 | 8996035 ~ 9087566 (-) | False | XLOC_005182 |
| TCONS_00010003 | lncRNA | upstream | 559397 | 9063675 ~ 9084568 (-) | True | XLOC_005182 |
| TCONS_00011101 | lncRNA | upstream | 723108 | 9227386 ~ 9228629 (-) | False | XLOC_005185 |
| TCONS_00009988 | mRNA | downstream | 413881 | 8064029 ~ 8070969 (-) | True | XLOC_005172 |
| TCONS_00009983 | mRNA | downstream | 630634 | 7757663 ~ 7854216 (-) | False | XLOC_005169 |
| TCONS_00009992 | mRNA | upstream | 5362 | 8509640 ~ 8511185 (-) | True | XLOC_005177 |
| TCONS_00009993 | mRNA | upstream | 77597 | 8581875 ~ 8817999 (-) | False | XLOC_005179 |
| TCONS_00009994 | mRNA | upstream | 78477 | 8582755 ~ 8817802 (-) | False | XLOC_005179 |
| TCONS_00009997 | mRNA | upstream | 450483 | 8954761 ~ 8958353 (-) | False | XLOC_005181 |
| TCONS_00009998 | mRNA | upstream | 452121 | 8956399 ~ 8958011 (-) | True | XLOC_005181 |
| TCONS_00009989 | other | downstream | 40829 | 8443904 ~ 8444021 (-) | True | XLOC_005174 |
| TCONS_00009977 | other | downstream | 981752 | 7502962 ~ 7503098 (-) | True | XLOC_005164 |
| TCONS_00009972 | other | downstream | 1249747 | 7223789 ~ 7235103 (-) | True | XLOC_005159 |
| TCONS_00009948 | other | downstream | 3066510 | 5399680 ~ 5418340 (-) | False | XLOC_005137 |
| TCONS_00009917 | other | downstream | 4183474 | 4298227 ~ 4301376 (-) | True | XLOC_005113 |
| TCONS_00009996 | other | upstream | 355915 | 8860193 ~ 8860307 (-) | True | XLOC_005180 |
| TCONS_00010002 | other | upstream | 545254 | 9049532 ~ 9051178 (-) | False | XLOC_005182 |
| TCONS_00010005 | other | upstream | 612774 | 9117052 ~ 9117178 (-) | True | XLOC_005184 |
| TCONS_00010008 | other | upstream | 841086 | 9345364 ~ 9345485 (-) | True | XLOC_005187 |
| TCONS_00010009 | other | upstream | 856038 | 9360316 ~ 9363873 (-) | False | XLOC_005188 |
