XLOC_005170


Basic Information

Item Value
gene id XLOC_005170
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 8003509 ~ 8073263 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010800
CTTGTTATTGAACACAAGCCATCTCCAATGGGAGGCGAAGCGTCTGTCTTTGTGATGGTCTCCAAAGGTGTCCCACAACCGAAGGGACACGCTTACGTCGTCCACAACATCTCTGGAACGTTCTAAGACCTGTGAGGAGTCAATTCAGCGGTTAAAATAGCACCCCTGTCCTAAAGCACAGAAGACCAGAGGCCTGTTTGATCTTTCCCTGTAATCTGTATCCCTTCCGCCGGCTGAAATTTAAATGAATCCTAACGGAAGCAAGTCTGAGAATCATGTGCTCATTATCTACAGTCATAATGCTCTCATAACAGCAGGGTAAATTTAATTGAGAGAAGATTTACCTCTTGACAGACTCTATACTGGTCGATGGCCCATACGGTTGGTACATGCGTGGCCAACAATTGGTACTGGGTCAGTGTAGTGTTGCAGGCCCGGGCGCAAATAAGGCGAGTCTTCCCAACAGCATTATCTCCAACAACGACACATTTGATAGTTTCTACGTTGGGTCTTTCGTAGTCCATAATGAGCACCCTACAGGAGAACAAGAATTCATATCAGCGCACATACATACTGACCAAAGGAGGTGTTTCATTTCAGATCTATTGAAACAGAACTGCAGATAGCATTGACCTTGCTATGGGTCAATGAAACCTCAATATAATACAGGACTTCTTGTTTTCACATTCCTAAAATAGTTGCCCTATATTATAGCCACATTTTGTTCCTGCTGAGCAGGACAAAACTCAACCCATATGACTTTCTTGTCAGATGCAATGTGCATGAACGCACGTACAAAGATGCTTGTGTTTCTAATTACAAATCTAAACATTTCAGATTAGAGTGTTTAATGACACCTTCAATTATCGGCTGTTAACTACTTGGCAAGTGCATCTAATTTAATCATACAATAATAAACAGATCATTCAAG
>TCONS_00011096
AAAAAACGGTCTGTTATGAGCAGCAGGAGGAGGAACCCGTTGAAAAGGAGTGTTGATGTGTTGCTGCCAGGGCAACAACAGCCGGCCTCCTCCTGATACCAAACCGGAGGCCAGCGGTGCTTCTCGAAATATTCCTGGTTTTCTGCTCACATTACAAGAGAAGAGAGGAAAGACAGCAGGGTTGAATGATATGTAGATACATACGCAGACAGCTTTTCTTTAGGTTTCTAAAGTCTCCCTGCAGACTGTCAGAAAGAAGAATCGGGGCATTCTCTTGTTATTGAACACAAGCCATCTCCAATGGGAGGCGAAGCGTCTGTCTTTGTGATGGTCTCCAAAGGTGTCCCACAACCGAAGGGACACGCTTACGTCGTCCACAACATCTCTGGAACGTTCTAAGACCTGTGAGGAGTCAATTCAGCGGTTAAAATAGCACCCCTGTCCTAAAGCACAGAAGACCAGAGGCCTGTTTGATCTTTCCCTGTAATCTGTATCCCTTCCGCCGGCTGAAATTTAAATGAATCCTAACGGAAGCAAGTCTGAGAATCATGTGCTCATTATCTACAGTCATAATGCTCTCATAACAGCAGGGTAAATTTAATTGAGAGAAGATTTACCTCTTGACAGACTCTATACTGGTCGATGGCCCATACGGTTGGTACATGCGTGGCCAACAATTGGTACTGGGTCAGTGTAGTGTTGCAGGCCCGGGCGCAAATAAGGCGAGTCTTCCCAACAGCATTATCTCCAACAACGACACATTTGATAGTTTCTACGTTGGGTCTTTCGTAGTCCATAATGAGCACCCTACAGGAGAACAAGAATTCATATCAGCGCACATACATACTGACCAAAGGAGGTGTTTCATTTCAGATCTATTGAAACAGAACTGCAGATAGCATTGACCTTGCTATGGGTCAATGAAACCTCAATATAATACAGGACTTCTTGTTTTCACATTCCTAAAATAGTTGCCCTATATTATAGCCACATTTTGTTCCTGCTGAGCAGGACAAAACTCAACCCATATGACTTTCTTGTCAGATGCAATGTGCATGAACGCACGTACAAAGATGCTTGTGTTTCTAATTACAAATCTAAACATTTCAGATTAGAGTGTTTAATGACACCTTCAATTATCGGCTGTTAACTACTTGGCAAGTGCATCTAATTTAATCATACAATAATAAACAGATCATTCAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010800 False 931 lncRNA 0.42 2 8003509 8010560
TCONS_00011096 True 1204 lncRNA 0.43 4 8003509 8073263

Neighbor

gene id symbol gene type direction distance location
XLOC_005169 ank3b coding downstream 149293 7757663 ~ 7854216 (-)
XLOC_005168 CABZ01050062.1 coding downstream 292946 7699632 ~ 7710563 (-)
XLOC_005167 ank3b coding downstream 348187 7653863 ~ 7655322 (-)
XLOC_005166 ccdc6b coding downstream 364389 7609928 ~ 7639120 (-)
XLOC_005165 slc16a9b coding downstream 396395 7589193 ~ 7607114 (-)
XLOC_005173 NA coding upstream 315067 8388330 ~ 8394645 (-)
XLOC_005174 CR354434.1 coding upstream 370641 8443904 ~ 8444021 (-)
XLOC_005175 NA coding upstream 404196 8477459 ~ 8480708 (-)
XLOC_005176 egr2b coding upstream 410575 8483838 ~ 8504278 (-)
XLOC_005177 CR932364.1 coding upstream 436377 8509640 ~ 8511185 (-)
XLOC_005164 FP102277.1 non-coding downstream 500411 7502962 ~ 7503098 (-)
XLOC_005163 NA non-coding downstream 562202 7406088 ~ 7441307 (-)
XLOC_005162 NA non-coding downstream 680558 7303565 ~ 7322951 (-)
XLOC_005157 NA non-coding downstream 860679 7142467 ~ 7142830 (-)
XLOC_005156 NA non-coding downstream 920136 7070639 ~ 7083373 (-)
XLOC_005178 NA non-coding upstream 500670 8573933 ~ 8575025 (-)
XLOC_005180 CR354554.1 non-coding upstream 786930 8860193 ~ 8860307 (-)

Expression


Co-expression Network