XLOC_005166 (ccdc6b)


Basic Information

Item Value
gene id XLOC_005166
gene name ccdc6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 7609928 ~ 7639120 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009979
GACTCACACACTGATGCTCAATGATGGCGGATAGTGCGAGTGAGAGCGACACTGACGGAGCCACCCCTCATTGctcctcatcttcatcctcctccaTCCTCATCTCTTCATTCCGTCTTGAGGAGCTGTCCAACCGCCTGGCGTCTTTGCAGCAGGAAAACAAAGTGTTGAAGATCGAGCTCGAGACGTTTAAACTGAAGTGTAAAGCTCTGCAGGAGGAGAACAGAGACTTGCGCAAAGCCAGCGTTACCATAcaAGCGAGAGCAGAACAAGAAGAAGAGTTCATCAGTAATACCCTGTTTAAGAAGATTCAAGCCTTgcagaaagagaaagaaacacTAGCAGTCAACTATGAGAAGGAAGAGGAGTTCCTCACCAATGAGCTCTCTCGGAAACTTATGCAACTCCAACATGAAAAAGCTGAACTGGAGCAGCACTTAGAACAGGAGCAGGAGTTTCAAGTCAACAAACTGATGAAGAAGATCAAGAAGCTGGAGAACGACACCATCTCCAAGCAGCTCACCTTAGAACAGCTCAGACGTGAAAAGATCGACTTGGAAAACACTTTAGAACAAGAACAAGAAGCACTTGTGAATCGGTTATGGAAGCGTATGGACAAACTGGAAGCAGAAAAAAGGATTCTTCAGGAGAAGCTGGACCAGCCTGTTTCTGCTCCTCCGTCCCCGAGAGACACCATCTCCATGGAGATCGACTCACCTGAGAATATGATGCGACACATCCGATTCCTCAAGAGTGAGGTGGAGCGGCTGAAGAAAAACCTCCGCACTTCAGAACTGCAGCatacAGAGAAGCGGGCTCAGTATATTGAAGAAGAGCGCCACATGCGGGAGGAGAACATCCGCCTGCAGAGGAAGCTCCAGAGGGAGGTGGAGCGCAGAGAGGCTCTGTGCCGACAGCTCTCTGAGAGCGAGTCCAGCCTGGAGATGGATGATGAGAGGTACTTCAATGAGATGTCTGCTCAAGGCCTGCGCCCTCGAACCGTATCCAGCCCCATTCCCTACAGCCCATCCCCATCCTCCAGCAGACCCATCTCACCAGGACTGTCGTATGTAAGTCACACAGTGGGCTTTACTCCACCAACTACGCTTACCAGAGCAGGCATGTCCTACTACAACTCACCCGGCCTGCATGCACATGTAGGAGCCTCGCACGGCATTGCAAGACCTTCTCCAAGGCGAAGCAACAGTCCAGACAAATTCAAGCGGCCTACGCCGCCACCTTCCCCCAACACACAAGCTGGTGTCCAGCCGCCGCCACCTCCTCCACCCATCGCACATCCAGTGTTCTCCCACAATGCTCCACAGCAGCCTTAAACCATTGCAGCATCAGAAAAAGACTCGAAACAGAGCTGCTACACTGTAATCTTCACCATCTCACACATAAGCCATTCATCTGTGCTCTTCATATTTTGTGCTTGAGATGCTCTTAAGGCATTCAGAGGGAATCTATAGCACACTTTTAGCTGGTACTTCGTACTCTAAGTGTGTGTCAAATGATATACACCCAAGCAATCTCTTAGAAATTGCTGTGAAATACTAAAAATATTACCAAGAATATAATGtgcatcaaatatttttttatagttggATATTTTCTCATGTTCAATCACTTTAAAAGTGTCAGTCACTAAACATCATAGAAAGCCACAAGTTAAAATCACAGTCAAAGCATTTATAGATTAAACTTTAATGTTACTTTTTGATATGTTTCGGTGATATTATTAATATCTTGTCTCAGAAcaagaataaaaactaaattcagCTTATACAGCAAATGTGTTTTATAGTTGCCTCATAAACATAGCTGTAAAATATGCCAATCATGCTAAATCTCACAAAGAAATGTctagggcagtgtttctcaaccacgctccTGCAGGActaccagcactgcatgttttggatgtctcctttgtacatttacatggctttcagtctctgctaatgatctgatgatctaaatcaggtgtgtttggttaaagagccatggaaatgtgcagagctggttgtcctccaggaacatggttgagaaacactggtctagggCATAGGTCTCAATCTCGATTtttggagggctgcagctctgttttgctccaaccctaatcaaacacagctgatccaaataatcaaggtgttctcGAATACCATAATTAGTTGAATCAgcggtgtttgattagggtcaaAGCTAAaccgtgcagagctgcggccctcgaggaatagagtttgagacctatgatctagGGCATATTTCACTCTCAAAAGTCTTAGTAATTGTAAATGAAAAAAGTTGAGAAACAATTTCCGAAACTTTCCAGATTTACTCTTTTAGTAAAACgttacatttcagtagtttgaaacaatatatcgGGAAACAAGTatgtaaaaaacagaaaatgcagtagcagtacagtatattactgtaacatacaacaccaacccaaacaatatatcactttaaactattaaagatgttcaaaaaagtcactttttcaaaccttTCAATGCTAAAAGTCGTCGGAAGAATGAataagatcccataatgcaattcaaaagcatgaataaatgtagaaaaataaaaattatgaatcacaaaatacagaaaactgctcatttacagatGTTTTCAGTGTATTCAGATTGATTTTGAATTGAAATATGACCTGCACATTAAGTGACTTGTTTAAATGACTGTCTTTTTGCAGCTGCTATAGTAATGCCACACTTTAATTTTCCCAATGTGTTCTAGAAGCTTTATATATGTTCTCCAAGACATTGAaggtgtagatcaggggtcaccaatctcggtcctggagggccggtgtcccttgtatggttttgctccaacttgcctcaacacacctgcctggataattcaagtatacctagcaagaccttgattagcttgttcaggtgtgtttgattagggttggagctaaaatgtgcaggacaccggcccttcaggaacaagtttgatgaccactGGTGTACATCaaaggtgtcaaatccagttcctggagggccgcagctctgcacagtttagttccaaccctaatcaaacccactcacttgtaggtttcaaacaagtctgaaggacttaattagtttgatcaggtgtgtttaattagggctaCAGccaaactctgcagagctgtggcactccaggaactggatttgacgcCTGTAGTGTAGATTAAGGAAGACTAGAGCAGGGgggaccaaccctgttcctggagatccacctccctcagatttcagctccaacccatatcaaacacacctgcctgtaattatcagccactgttcaggtcctaattaattggttcagctgtgtttgggctgaaatctgcaggaaggtagatctccaggaacagggtttgaGTGTGTTTCTGTAGAGCGTTTGCCTTCTCATAAACTCACCTCTGCACAAACAGTGTCTGATACCACTGTGATTATATATGTATAGTTTTATTTTACCTTCAGAAATTCTGCATTTGAACAATTGTGCTTGGAAGCAAGTCCAAGCTTGGGTAAATAACTTGTTGTATGCTTTGCAAAAACCATATGGAAGTCACTTTTTAAGTGTTACCTCCATTAGTTTATGCTTGTAATCAGTTTTTGTAGGAGTTACCAAATAAATCCCAGAGTTGGTGCAGCTGAAAGCAAGTAGACGGAAGAAAGCGCTTTTTAAATACTGTGAATAAGTAATTTCATGCAGATGTACTGCAGATCAAAGCAAACCAATGATTCTTTTCCTGGTACTAACCAGCTTGTTTGTAGTTAAGTGAGCTGTTTAAGATTGGTTGCCATGGCCATGTGGACACTGCAAGTGTACATAGATGCAAAACAACAGTGTTTGCTGCAGCTTGACATCTGTGCTCTTCTTATTAGCACATGGTGTGTCTTTAAATCAGTTTGATTTTGTCTTTAGAGCTTCGTTCATTTAATCGAGGATGCGTATATTTAAGTTGACGTTTCACTTGTTTACCGTATTACTGTAAATAGTCATGTCTTTGTTTTTTAATTCTGTGTTTCTGCATTTGTTTTCGTTCCTTTTAGTCATTTTGTTGGCCTGACTagatctttttgttttttttttcggttGACGAATGAATGTAACGTTTGCTAATTTTACTGCTATCATTAACCGATAGGACACCTTTGAGCCTTAACTCACTGTAGTGTTGCTAAATGTAAGCGTCGTCTAGCTTATCCCCACATCCGACTATTAAAGCCTTAAAATGTGGTTCGGCTATTccgtggtttgtttgtttgtcgaGCAGATGATAATTTCTGGTCCATTTGAAACAGGTACAGGCTGTGCGTTTCGTGATTTTTGTATAGTAGAAACATTATGTCATGGTTATTTTTGGTTATTAAAACATTGATGATGATCAGAA

Function

symbol description
ccdc6b Orthologous to human CCDC6 (coiled-coil domain containing 6).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-869 Orthologous to human CCDC6 (coiled-coil domain containing 6).

Ensembl:

ensembl_id ENSDARG00000017595

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009979 True 4417 mRNA 0.42 9 7609928 7639120

Neighbor

gene id symbol gene type direction distance location
XLOC_005165 slc16a9b coding downstream 2814 7589193 ~ 7607114 (-)
XLOC_005164 FP102277.1 coding downstream 106830 7502962 ~ 7503098 (-)
XLOC_005163 NA coding downstream 168621 7406088 ~ 7441307 (-)
XLOC_005162 NA coding downstream 286977 7303565 ~ 7322951 (-)
XLOC_005161 zgc:171971 coding downstream 329377 7268392 ~ 7280551 (-)
XLOC_005167 ank3b coding upstream 14743 7653863 ~ 7655322 (-)
XLOC_005168 CABZ01050062.1 coding upstream 60512 7699632 ~ 7710563 (-)
XLOC_005169 ank3b coding upstream 118543 7757663 ~ 7854216 (-)
XLOC_005170 NA coding upstream 364389 8003509 ~ 8073263 (-)
XLOC_005171 NA coding upstream 400864 8039984 ~ 8046473 (-)
XLOC_005157 NA non-coding downstream 467098 7142467 ~ 7142830 (-)
XLOC_005156 NA non-coding downstream 526555 7070639 ~ 7083373 (-)
XLOC_005173 NA non-coding upstream 749210 8388330 ~ 8394645 (-)
XLOC_005174 CR354434.1 non-coding upstream 804784 8443904 ~ 8444021 (-)
XLOC_005175 NA non-coding upstream 838339 8477459 ~ 8480708 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_01586092_01594760 CCDC6 coding CI01000047 null 1583943 ~ 1596377 (+)