XLOC_005169 (ank3b)


Basic Information

Item Value
gene id XLOC_005169
gene name ank3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 7757663 ~ 7854216 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009982
TGATGATAAAGCGCGCAGAGTAATGCTTCTGGATTTTTTCGCGTAGtcgtaatatttaatttttaatttaatatctatATAAGTTGTCATGTGCGTTGAGCTTTAATGCACCTCTGAAGTGGCCGGATCTGAAACTCATTGATTGCTGGGATCATTCGGGACTGCGGGGACGAAAGTTGTAATGGAGAATGGAATAGAGGTGGAATCAACTGACAGTAATGCCAGTTACCTCAGAGCGGCCCGGGCTGGAAACATTGAGAAAGCCCTCGATTATATAAAGACTGGTGTGGACATCAACATCTGCAATCAGAATGGGTTGAACGCTCTTCATCTGGCTTCCAAAGAAGGCCACGTGGAGGTTGTGACGGAGCTTATTAAACTTGGTGCCACGGTGGACGCCGCAACAAAGaaaggaAACACTGCTTTGCACATAGCATCACTCGCCGGACAGGCGGACGTCGTCAAGGAACTTGTGAATAATGGAGCCAATATCAACGCACAGTCTCAGAATGGCTTTACGCCACTCTACATGGCTGCCCAGGAAAACCACCTGGACGTCGTCAAATTCCTACTGGATAATGGATCCAGTCAGAGCATCGCCACGGAGgATGGTTTTACTCCGCTGGCCGTAGCTCTCCAGCAGGGTCATGATCAGGTGGTGTCTCTGCTCCTGGAGAACGACACCAAGGGGAAGGTGCGATTACCTGCCCTGCACATCGCTGCCCGTAAGGATGACACAAAAGCAGCGGCGCTACTCCTGCAGAACGACCACAACGCAGATATTGAATCCAAGAGCGGCTTCACCCCTCTCCATATAGCGGCTCATTACGGGAACATCAACGTTGCGACCCTGCTGCTGAACCGCGGGGCTGCCGTTGACTTCAAGGCGAGGAATGACATCACGCCTCTCCATGTGGCATCGAAAAGAGGAAACGCCAACATGGTCAGGCTTCTGCTGGAGAGAGGAGCCCGAATCGACGCCAGAACCAAGGATGGCCTAACACCTTTACACTGTGGAGCGAGGAGCGGTCATGAGCAAGTGGTTGAGATGTTGCTAGATCGCGGAGCACCCATCCTTTCAAAAACAAAGAATGGCTTGTCGCCGCTGCACATGGCCACGCAGGGAGATCATCTGAACTGCGTCCAGCTCTTGATTCATCATGAGGTGCCTGTGGACGACGTCACCAACGATTACCTGACAGCCTTGCACGTCGCTGCACATTGCGGACACTACAAAGTCGCCAAGGTCCTAGTGGACAAGAGGGCCAATCCGAATGCCAAAGCACTGaatggTTTTACACCACTTCACATCGCTTGCAAGAAGAACAGGATTAAAGTGATGGAGCTGCTGCTGAAACACGGAGCGTCCATTCAGGCTGTGACTGAGTCTGGACTCACGCCGATTCATGTGGCTGCTTTTATGGGCCATGAAAACATTGTGACTCAGTTAACAAATCACGGAGCGTCTCCTAACACAATGAATGTGagGGGAGAGACGGCGCTCCATATGGCTGCCAGGGCAGGACAGGCAAACGTGGTGAAATTCCTGGTGGCGAATGGAGCAGATGTGGACGCAAAAGCCAAGgaCGATCAGACCCCGTTGCATATATCCAGTCGTCTGGGAAAACCAGACATTGTCCAGCAACTGCTGCAGCATGGGGCTTTACCCGACTCCACCACCACGTCTGGATACACGCCACTGCACCTGGCTGCACGGGACGGCCACAAAGACGTGGCATCCATCCTGCTGGACAACGGAGCCTCTCTTGGCATTACTACCAAG
>TCONS_00009983
TTAGACACTTCCAGCTGGTGGCGAAGGAAACGCGCGTAAGATCCTCCATCCCAGCTGCCCTCCACCCTTCTCTCCGCTCTCCGTCCCGGCTCACTGCACGCTGGGGATGGGTTCAGGTAGGACCTGGAGAAAGAAAAAAGCACCACGGGGAAAGCACCGTCTCCTCCAAACGCTCATCTCTTCTTTCTCACACAAACGCAGTTCCCCAGCTTTAGCTCCTCGCTGGAACACATagagggagatttttttttttcttttttcttctgtgCGTGCACTCTTCAGTCTTTCTTCACTTTCTGAAAGGATACCTCACTTGGGCTTTTTTGCATCATGGCACACGCAGCATCCCAGCTGAAGAAAAAAGCCGATCTGGAACTTACAGCCGCCGaggaagagaagaagaaaaaaagcagaaAGAGAACCAGGGATCCTAAGAAAAAGACTGACAGTAATGCCAGTTACCTCAGAGCGGCCCGGGCTGGAAACATTGAGAAAGCCCTCGATTATATAAAGACTGGTGTGGACATCAACATCTGCAATCAGAATGGGTTGAACGCTCTTCATCTGGCTTCCAAAGAAGGCCACGTGGAGGTTGTGACGGAGCTTATTAAACTTGGTGCCACGGTGGACGCCGCAACAAAGaaaggaAACACTGCTTTGCACATAGCATCACTCGCCGGACAGGCGGACGTCGTCAAGGAACTTGTGAATAATGGAGCCAATATCAACGCACAGTCTCAGAATGGCTTTACGCCACTCTACATGGCTGCCCAGGAAAACCACCTGGACGTCGTCAAATTCCTACTGGATAATGGATCCAGTCAGAGCATCGCCACGGAGgATGGTTTTACTCCGCTGGCCGTAGCTCTCCAGCAGGGTCATGATCAGGTGGTGTCTCTGCTCCTGGAGAACGACACCAAGGGGAAGGTGCGATTACCTGCCCTGCACATCGCTGCCCGTAAGGATGACACAAAAGCAGCGGCGCTACTCCTGCAGAACGACCACAACGCAGATATTGAATCCAAGAGCGGCTTCACCCCTCTCCATATAGCGGCTCATTACGGGAACATCAACGTTGCGACCCTGCTGCTGAACCGCGGGGCTGCCGTTGACTTCAAGGCGAGGAATGACATCACGCCTCTCCATGTGGCATCGAAAAGAGGAAACGCCAACATGGTCAGGCTTCTGCTGGAGAGAGGAGCCCGAATCGACGCCAGAACCAAGGATGGCCTAACACCTTTACACTGTGGAGCGAGGAGCGGTCATGAGCAAGTGGTTGAGATGTTGCTAGATCGCGGAGCACCCATCCTTTCAAAAACAAAGAATGGCTTGTCGCCGCTGCACATGGCCACGCAGGGAGATCATCTGAACTGCGTCCAGCTCTTGATTCATCATGAGGTGCCTGTGGACGACGTCACCAACGATTACCTGACAGCCTTGCACGTCGCTGCACATTGCGGACACTACAAAGTCGCCAAGGTCCTAGTGGACAAGAGGGCCAATCCGAATGCCAAAGCACTGaatggTTTTACACCACTTCACATCGCTTGCAAGAAGAACAGGATTAAAGTGATGGAGCTGCTGCTGAAACACGGAGCGTCCATTCAGGCTGTGACTGAGTCTGGACTCACGCCGATTCATGTGGCTGCTTTTATGGGCCATGAAAACATTGTGACTCAGTTAACAAATCACGGAGCGTCTCCTAACACAATGAATGTGagGGGAGAGACGGCGCTCCATATGGCTGCCAGGGCAGGACAGGCAAACGTGGTGAAATTCCTGGTGGCGAATGGAGCAGATGTGGACGCAAAAGCCAAGgaCGATCAGACCCCGTTGCATATATCCAGTCGTCTGGGAAAACCAGACATTGTCCAGCAACTGCTGCAGCATGGGGCTTTACCCGACTCCACCACCACGTCTGGATACACGCCACTGCACCTGGCTGCACGGGACGGCCACAAAGACGTGGCATCCATCCTGCTGGACAACGGAGCCTCTCTTGGCATTACTACCAAG
>TCONS_00009984
CCTGCAGTAAAGATTCCAGAGTCTACTGACAGTAATGCCAGTTACCTCAGAGCGGCCCGGGCTGGAAACATTGAGAAAGCCCTCGATTATATAAAGACTGGTGTGGACATCAACATCTGCAATCAGAATGGGTTGAACGCTCTTCATCTGGCTTCCAAAGAAGGCCACGTGGAGGTTGTGACGGAGCTTATTAAACTTGGTGCCACGGTGGACGCCGCAACAAAGaaaggaAACACTGCTTTGCACATAGCATCACTCGCCGGACAGGCGGACGTCGTCAAGGAACTTGTGAATAATGGAGCCAATATCAACGCACAGTCTCAGAATGGCTTTACGCCACTCTACATGGCTGCCCAGGAAAACCACCTGGACGTCGTCAAATTCCTACTGGATAATGGATCCAGTCAGAGCATCGCCACGGAGgATGGTTTTACTCCGCTGGCCGTAGCTCTCCAGCAGGGTCATGATCAGGTGGTGTCTCTGCTCCTGGAGAACGACACCAAGGGGAAGGTGCGATTACCTGCCCTGCACATCGCTGCCCGTAAGGATGACACAAAAGCAGCGGCGCTACTCCTGCAGAACGACCACAACGCAGATATTGAATCCAAGAGCGGCTTCACCCCTCTCCATATAGCGGCTCATTACGGGAACATCAACGTTGCGACCCTGCTGCTGAACCGCGGGGCTGCCGTTGACTTCAAGGCGAGGAATGACATCACGCCTCTCCATGTGGCATCGAAAAGAGGAAACGCCAACATGGTCAGGCTTCTGCTGGAGAGAGGAGCCCGAATCGACGCCAGAACCAAGGTCAGTGCTGCGAGCAGTAAAAACCAAACAGACCGTCTTTCTTTCGCAGCTCTATATTTATCTCTTCAGAGGAAGTGA
>TCONS_00009985
TGTTTAGCCTCATTGTTGGAGCAGCCAACTcccgtgcaaaaaaaaaaaaaaaataacACTGACAGTAATGCCAGTTACCTCAGAGCGGCCCGGGCTGGAAACATTGAGAAAGCCCTCGATTATATAAAGACTGGTGTGGACATCAACATCTGCAATCAGAATGGGTTGAACGCTCTTCATCTGGCTTCCAAAGAAGGCCACGTGGAGGTTGTGACGGAGCTTATTAAACTTGGTGCCACGGTGGACGCCGCAACAAAGaaaggaAACACTGCTTTGCACATAGCATCACTCGCCGGACAGGCGGACGTCGTCAAGGAACTTGTGAATAATGGAGCCAATATCAACGCACAGTCTCAGAATGGCTTTACGCCACTCTACATGGCTGCCCAGGAAAACCACCTGGACGTCGTCAAATTCCTACTGGATAATGGATCCAGTCAGAGCATCGCCACGGAGgATGGTTTTACTCCGCTGGCCGTAGCTCTCCAGCAGGGTCATGATCAGGTGGTGTCTCTGCTCCTGGAGAACGACACCAAGGGGAAGGTGCGATTACCTGCCCTGCACATCGCTGCCCGTAAGGATGACACAAAAGCAGCGGCGCTACTCCTGCAGAACGACCACAACGCAGATATTGAATCCAAGAGCGGCTTCACCCCTCTCCATATAGCGGCTCATTACGGGAACATCAACGTTGCGACCCTGCTGCTGAACCGCGGGGCTGCCGTTGACTTCAAGGCGAGGGTAAGGACGCAAAGCCCCAAATTACTTGAGGGAGAGAAAATGATGAGTAGTtgtttcctttttgggtga
>TCONS_00009986
ACACTCAGCCAGGAGAGAGACCACTAGTGCCTACAAATATGACTGACAGTAATGCCAGTTACCTCAGAGCGGCCCGGGCTGGAAACATTGAGAAAGCCCTCGATTATATAAAGACTGGTGTGGACATCAACATCTGCAATCAGAATGGGTTGAACGCTCTTCATCTGGCTTCCAAAGAAGGCCACGTGGAGGTTGTGACGGAGCTTATTAAACTTGGTGCCACGGTGGACGCCGCAACAAAGaaaggaAACACTGCTTTGCACATAGCATCACTCGCCGGACAGGCGGACGTCGTCAAGGAACTTGTGAATAATGGAGCCAATATCAACGCACAGTCTCAGAATGGCTTTACGCCACTCTACATGGCTGCCCAGGAAAACCACCTGGACGTCGTCAAATTCCTACTGGATAATGGATCCAGTCAGAGCATCGCCACGGAGgATGGTTTTACTCCGCTGGCCGTAGCTCTC
>TCONS_00009987
TTAGACACTTCCAGCTGGTGGCGAAGGAAACGCGCGTAAGATCCTCCATCCCAGCTGCCCTCCACCCTTCTCTCCGCTCTCCGTCCCGGCTCACTGCACGCTGGGGATGGGTTCAGGTAGGACCTGGAGAAAGAAAAAAGCACCACGGGGAAAGCACCGTCTCCTCCAAACGCTCATCTCTTCTTTCTCACACAAACGCAGTTCCCCAGCTTTAGCTCCTCGCTGGAACACATagagggagatttttttttttcttttttcttctgtgCGTGCACTCTTCAGTCTTTCTTCACTTTCTGAAAGGATACCTCACTTGGGCTTTTTTGCATCATGGCACACGCAGCATCCCAGCTGAAGAAAAAAGCCGATCTGGAACTTACAGCCGCCGaggaagagaagaagaaaaaaagcagaaAGAGAACCAGGGATCCTAAGAAAAAGAATGGGTTGAACGCTCTTCATCTGGCTTCCAAAGAAGGCCACGTGGAGGTTGTGACGGAGCTTATTAAACTTGGTGCCACGGTGGACGCCGCAACAAAGaaaggaAACACTGCTTTGCACATAGCATCACTCGCCGGACAGGCGGACGTCGTCAAGGAACTTGTGAATAATGGAGCCAATATCAACGCACAGTCTCAGGTAGAGTCAGAGCTTGACGTAGGCTTACTGCAAGTGAGTGATGCTGACACTGAATCCAAAGATGCTCATTAAacatatgcacaaaactggaaca

Function

symbol description
ank3b Predicted to act upstream of or within signal transduction. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human ANK3 (ankyrin 3).

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-060621-2 Predicted to act upstream of or within signal transduction. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human ANK3 (ankyrin 3).

Ensembl:

ensembl_id ENSDARG00000077582

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009982 False 1783 mRNA 0.52 14 7757663 7824291
TCONS_00009983 False 2016 mRNA 0.53 14 7757663 7854216
TCONS_00009984 False 885 mRNA 0.53 8 7780987 7806007
TCONS_00009985 False 810 mRNA 0.51 8 7783261 7807298
TCONS_00009986 False 470 mRNA 0.51 6 7792935 7824430
TCONS_00009987 True 733 lncRNA 0.49 3 7801194 7854216

Neighbor

gene id symbol gene type direction distance location
XLOC_005168 CABZ01050062.1 coding downstream 47100 7699632 ~ 7710563 (-)
XLOC_005167 ank3b coding downstream 102341 7653863 ~ 7655322 (-)
XLOC_005166 ccdc6b coding downstream 118543 7609928 ~ 7639120 (-)
XLOC_005165 slc16a9b coding downstream 150549 7589193 ~ 7607114 (-)
XLOC_005164 FP102277.1 coding downstream 254565 7502962 ~ 7503098 (-)
XLOC_005170 NA coding upstream 149293 8003509 ~ 8073263 (-)
XLOC_005171 NA coding upstream 185768 8039984 ~ 8046473 (-)
XLOC_005172 tmem26b coding upstream 209813 8064029 ~ 8070969 (-)
XLOC_005173 NA coding upstream 534114 8388330 ~ 8394645 (-)
XLOC_005174 CR354434.1 coding upstream 589688 8443904 ~ 8444021 (-)
XLOC_005163 NA non-coding downstream 316356 7406088 ~ 7441307 (-)
XLOC_005162 NA non-coding downstream 434712 7303565 ~ 7322951 (-)
XLOC_005157 NA non-coding downstream 614833 7142467 ~ 7142830 (-)
XLOC_005156 NA non-coding downstream 674290 7070639 ~ 7083373 (-)
XLOC_005175 NA non-coding upstream 623243 8477459 ~ 8480708 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_01470439_01470729 NA coding CI01000047 null 1470399 ~ 1470794 (-)