RNA id: TCONS_00009967


Basic Information

Item Value
RNA id TCONS_00009967
length 5636
RNA type mRNA
GC content 0.52
exon number 31
gene id XLOC_005154
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 6566233 ~ 6905375 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAACGCTTCTGGTGGAGAACATGCAGATAAACGGCAGAGCAGAAGACCCTGACAGGACCATCTCTTTATCTTTACGGGACAACAATGACTACTGGGTCATTCTGGACCCGGTCAAGCAGCGCCTGTATCTTAACAGCACCGGACGAGTTCTGGACCGAGATCCTCCCTCCTACATCCAGTCCATTGTGGTGCAGGTTCAGTGTACTAATGAGCTTGTTGGCACGGTGATCCTACACGAGGTGCGGATAGTCGTGCGGGATCGAAACGACAACGCCCCACGCTTTCAGCAACCGCGCTACTATGTGGCCGTTAATGAGCTAACGCCTGTCGGAACCACCATCTTCTCAGGTTTTACAGGGAACAACGGGGCTGTTGACATCGATGATGGTCCTAATGGACAGATTGAATACACTATTCAGTACAACCCTAGAGATCCGACCACTAACAGGACATTCGACATCCCCCTCACCCTGTCTGGATCTGTGGTTCTCAGAGAGAGGCTGAATTATGAAGAAATCACACGCTACCTTGTCATCATTCAAGCCAATGACCGAGCTCCAAACCCGAAGGACCGGCTCACTGCCACCACCACGCTCACAGTAGATGTTTTGGATGGGGACGACCTGGGCCCGATGTTTCTGCCTTGCAGTTTGGTCGACAACACCCGTGACTGCAAACCTCTTACGTACCGTGCCAGCATCCTGGAGCTCACCGATCCTaGCCGAGTAAACCCCGTGAACGTGACTCCCCCCATCCAGGCCGTGGATCAAGACAGAAACATCCAGCCTCCGTCAGACCGCCCAGGAATCCTGTACTCTATCCTCATAGGAAAACCTGAAACGTACGGGGAGTTTTTCTGGATGAATCGGAGCACCGCTGAACTGCAGCTCCTGAAAGCCATCAGTAGAGAAAAGTATCAACATTTCGACCTGGTGATCAAGGCAGAGCAGGATAACGGACACCCTCTCCCGGCATTCGCTAATCTCCACATTGAGGTCCTCGATGAGAACAATCAGGCGCCGTATTTCCAGGTGGCCACTTATCATGGATTCATCTCAGAGTCTGCTCCTCTGGGCACCACCATCTCCAGCAGTGCCAATCTCTCCACCCCGCTTGCCATTATCGTCCTGGATAACGACATCGAGGAGACAAAAGATCCCATGGTGCGCATCTCTTTGGACAACTACAACGGCATCTTTGCAGTGACGGCGGGTGGAATTGTACGCTACCTGACACTACTGAGGCCCGTGGACCATGAAGAACAGCCGACTTATGCCTTCACGATGATTGCATCGGATGGAGTCCAGGAAAGCGCCCCGGTCACCATTAATATCACTGTGATTGATGCCAATGACAACACGCCAACCTTCCCCAACGTCTCCTACGGCGTGAGCGTTTACACAGACATGCAGCCCGGGGACCCAGTCTTACAGCTGACAGCACTGGACGCTGATGATGGTCCCAACGGCCTGGTGAGCTACAAGATCTTGGCGGGGGATCAGGGACATTTCACTATCAATGACTGCACAGGAGTGATCACAGTGCTGCCTAGCGTCAACCTGACTGTCGGCCGATCCTACGCCCTCACCGTCCGGGCCACCGACAACGGCCCCACAGCCCAGAGAAGGAGTTCCATTACTACGGTTTACATTGAAGTTCTGCCACCCAACAACCAGAGTCCTCCCCGTTTCCATCAGCTCGTTTACAGCCTGGAGATCAGCGAAGCCATGAGGACTGGAGCCACACTGCTCAACATACAGGCAACGGACCGTGAAAAAGATCCCATTACATACAGCATCCAGAAAGGAGATCCAAACAATGTCTTTGAAGTCTCCCAAACGTCTGGGCTATTGTTGCTGGCGAAGACATTGGACAGAGAGATCACAGATCACTACACACTAACAGTCACAGCTTCTGACGGCAAACCAGATGGGACCTCCACTACTACGGTGAATATAGCGGTGACTGATGTCAATGATAATGACCCTGAGTTCGATCCGCTGCTGCCCCTTAATCTCACAGTTCAAGAGGAAGAGGCTAATGCTTTCGTGGGTCAAGTAAAGGCCACCGATCTGGACCTGGGCATTAATGGACAGGTCCGCTACCGTCTGGTCAGTTACCCGGATCTCTTTCGGATCAGTCCAAATGGAAGCATCTTCACCGCTATGCCTCTAGACCGGGAGGAGAGGGCTCAATATGATCTGATCGTGCAGGCTTCAGATGGGGCCAAAGACCCTCGGCGAACCACCATCACGCTCTCCATCACTGTGCTGGATGTGGATGACAACAGTCCAGTCTTCTCTCCACCTGCGTATCACGCCACACTGCCAGAAAACAGCCCAGTGGGGACTGTCATCCTCAACATCAGTGCACTGGACCCCGATCTTGATGCCAATGTCACATACCGCATCAGGACCAAAGAGGCCAGAGAGCTGTTTGCGGTGAACTCTCTCACCGGAGAGCTGAAGGTGCTTCGGTCGCTGGATTTCGAGAAACTCTTACCGAACGCAACAACGCAAACCTTTGTGGTGGAGGCTCTGGATGGAGGAAGCGGCAAAATGCCCCCAGGGTTGGCTTCTGTTACTGTCACTGTATTGGACATGAACGACTTCCCACCAGTGTTCAGTCAAACGCTGTACCGGGGAATGGTGGCACCCAACGCTGTCAAGGGGACCATAGTGACCGCTGTACATGCTGAGGACCTGGACCCGCCGGGTACAGCGGCAAGTCGAGTTCACTATAAAGCGGATCTGGAGCAGTTTCCTTACAGCACTAGTATCTTTGACGTGGAGGAAAACTCAGGAAATattttcaccagggtcaatctgAACGAGGAGCCCAACACTAAATTCAGCTTGGCAGTCATTGCCTATGATGACGGGGAGCCGATGAAGTTCAATAAGTCTCTGGTGGAGATCACTGTCCTGCAGCTGTCCATCATTCCTGTGTTCACACAAGAGGAGTACAGGTTTGCTCCGGTCAGTGAGAACGCCCCAGTGGGAACGGTCGCTGGAGTCATCTTGGCGGCTGCAATAAACCAAACCATCGTCTACTCTATCATTGAAGGAAATGAAGGCGgTGAATTTGTGGTGAACAATAACACTGGAGTAATCAGCACTGCAAAACCTCTGGACTATGAGAGCAACAGCAGTTATGTCCTGCGCGTGGAAGCGGACTCCATGAGGGTGGTGTCCTCCAACCTACGAGCCCCAGCCAAAAGCAACACAGCAAAGGTCTTCATTGATGTGCAAGACGAGAACGATCATCCTCCTGTGTTCACTAAGCCCTTTTACCTCGGCGGGGTTGCAGAGGATGCCAAGACCTTCACCTCTGTTTTACAAGTCCAGGCTCTGGATAAGGACACAGGGAATTACAGCGCCATGCTGTATAGGCTGATTATCCCTCCAACCACTGACGGCAAAGACGGCTTTGTTATTGAGCCCTTCACTGGGGTAATTAAGACAGCCATCATGTACAGGAACATGCGGCGCTCCTACTTCAAGTTTGACGTGGTGGCGACGGATAACTACGGCGAGGGACTCAGCAGCAGCGCTCAAGTGGTGGTGTCAGTGGTTAACCAGCTGGACATGCAGGTGGTCGTATCCAACGTGCCGCCCACGGTAGTGGAACAGAACAAGGACCGGCTCATCGGGATTTTAGAGCGTTACGTCCAGGACCAGATCCCAGGAGCTAAAGTAGTTATGGAGTCAATTGGAGCACGTCGATTTGGCGATGGATATGAACAAGAGGACTACACCAAATCTGACCTGATGGTTTACGCAATCGACCCTCTGACCAACAGAGCCCTCTCAAGACAGGAGCTCTTCAAgttTTTAGATGGAAAGCTGCTGGACATCAATAAGGAGTTTCAGCCCTACCTAGGTCGTGGAGGTCGAATTCTGGAAATTCGCACACCGGACGTGGTGGAGAGCGTGACAAGGGCTGTTCACTCTGTGGGATACACTGAAGGAGCTCTGCTGGCTCTGGCTGTAATCATCATCCTGTGCTGTATTCCTGCCATCCTCATCGTCATCATCACCTACAGACAATTCAAAGAGCGTCAGGCAGAGTGTGCAAAAACAGCCCGGATCCAAATGGCTCTTCCCACTGGCAAATCTGGAGGTGCTGCCACCAACAATCTGTATGAAGAACTCGGCGACAGCACCATACCGAAGACTAAGAGGTGTGTTCTGAAGGATGGTGATCGGCAGCGTCTCATTAGCTCATTCGCTTCCCGTGCTATCACTGCTCACAAGCTGTCCACCGCCAACGGAATCCTGCTCAACAACTTTCCCAAGTCGGAGAGCAACATTACCTTTCTTTCAGATGACAACCCACTTACTACAACCAACCCCCTGTACCGTGATGATGTCACTCTTGGCAGCCCTGAGCACCAAAATCGGAGTTACCTCTTAGACATGTATTCACCCAGTATGAGAGGTCTGAGTAAGTCCATTATGGGATTCCCGAATTCAGGCTCAGGACATTCCTGGACATTACCTTCTCGGTTGCACAAGTGGGACGAATCTCAGCGGAGTAGGAGGGTGGTGATGGATCCAGTTCAGTGGGAGCTGCAGCTGCTAAAGGCCAGCCTTAAGGACAGCAAGGAGATGATTGATGGGTTTGATGGACTTGGGGATGAAGATCCAGAGCCCAAATTGACTGTAAAAGAGCAGGCACGACAGTTTGAGCAGCAGGCCTTGCAGGACGTAAAGTTGAGGCAAGGTCAGGACTCTCGTGGGTCACTCTCTTCCGAAATTATTCTCTCTGTTTTTGAAACCCCACACAACAGCAGACCTCCAGCGATAATCATTACTCAGAGTGACTCAACACCTCCGCCCAGTCATAAGCCCACTCCGCCAGTGCTGCGGAAGTACACCAGACTGTCTTCTTATCCTGACTTAGAGTCTTACGAGGTCAATGTGGAGATCATTCCAGACCCTCCTGATGTACCTGCTCCACAACCACCACCACCGCCTCCACCTCCCTCCAGTCCGCCCCCACCCCCTCCTCCCTCCAGTCCTCCACCACTCCCACCTTCCTCCAGTCCTCCACCACTGCCTCCTTCCTCCAGTCCTCCACTTGTCCCTCCATCCCCATCAGTTCCTCCACATCCagctcctccacctcctcctcctctacCCCCTCCCTTATCACCTTCCTTTTCTCGTCCCATACCTCCTTCTCCATTTGTCCTCCCTCCTCTACCCTCCGTCACGTCCCTCCGACCGGTGTCCTTACGGCCTGCACCACCTCCACTGCCGTCTGAGCCAGAGCCTCCCAAGAGGGAACTCAAGGGGATCCTTAAGAACCTCCAGAACATAGCAGACATCGAGAAATCTGTTGCCAATATGTACAGTCAAATAGATAAAAAGCAGCGCCCACTAGTGATCAACCCTAAACCGCAAGTGTCTGTCGAACCAGAGGCTGGTGTAACAGAGGCGGAGCCTGCTCAAGAAGGACCACCATCAGAGCCCAATCCAAGCATGAACTCAGTAGTGGAGGAGCTGGAGAAACGCTTTCCATCTCAGTCCACTGTTCTGTGATACTTTCCATGTTGCTATTACTCTCTTAGAGGCAGTTCGCACAGGATACATTCTAGGGGGCAGTTTACACACAACGTTTGCAGCCAAAAA

Function

GO:

id name namespace
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0048839 inner ear development biological_process
GO:0007605 sensory perception of sound biological_process
GO:0001654 eye development biological_process
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0032420 stereocilium cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050214-1 Predicted to enable calcium ion binding activity. Acts upstream of or within detection of light stimulus involved in visual perception and eye development. Predicted to be located in plasma membrane and stereocilium. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; epiphysis; eye; and eye photoreceptor cell. Human ortholog(s) of this gene implicated in Usher syndrome type 1D; Usher syndrome type 1F; and autosomal recessive nonsyndromic deafness 23. Orthologous to human PCDH15 (protocadherin related 15).

Ensembl:

ensembl_id ENSDART00000106391

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010798 lncRNA downstream 73141 6384715 ~ 6493092 (-) False XLOC_005151
TCONS_00011091 lncRNA downstream 73141 6387835 ~ 6493092 (-) False XLOC_005151
TCONS_00011090 lncRNA downstream 73144 6372242 ~ 6493089 (-) False XLOC_005151
TCONS_00009965 lncRNA downstream 73144 6390339 ~ 6493089 (-) True XLOC_005151
TCONS_00011088 lncRNA downstream 73167 6306823 ~ 6493066 (-) False XLOC_005151
TCONS_00011092 lncRNA upstream 198843 7017519 ~ 7044694 (-) True XLOC_005155
TCONS_00011093 lncRNA upstream 251963 7070639 ~ 7083373 (-) True XLOC_005156
TCONS_00010799 lncRNA upstream 323791 7142467 ~ 7142830 (-) True XLOC_005157
TCONS_00009974 lncRNA upstream 429048 7247724 ~ 7253237 (-) False XLOC_005160
TCONS_00009975 lncRNA upstream 429064 7247740 ~ 7253218 (-) True XLOC_005160
TCONS_00009966 mRNA downstream 14552 6542789 ~ 6551681 (-) True XLOC_005153
TCONS_00009963 mRNA downstream 388339 6160446 ~ 6177894 (-) False XLOC_005150
TCONS_00009964 mRNA downstream 394079 6161121 ~ 6172154 (-) True XLOC_005150
TCONS_00009962 mRNA downstream 406688 6158225 ~ 6159545 (-) True XLOC_005149
TCONS_00009961 mRNA downstream 502905 6049355 ~ 6063328 (-) True XLOC_005146
TCONS_00009969 mRNA upstream 61922 6880598 ~ 6905375 (-) True XLOC_005154
TCONS_00009970 mRNA upstream 330772 7149448 ~ 7157527 (-) True XLOC_005158
TCONS_00009971 mRNA upstream 375103 7193779 ~ 7234915 (-) False XLOC_005159
TCONS_00009973 mRNA upstream 418990 7237666 ~ 7253270 (-) False XLOC_005160
TCONS_00009976 mRNA upstream 449716 7268392 ~ 7280551 (-) True XLOC_005161
TCONS_00009948 other downstream 1147893 5399680 ~ 5418340 (-) False XLOC_005137
TCONS_00009917 other downstream 2264857 4298227 ~ 4301376 (-) True XLOC_005113
TCONS_00009915 other downstream 2264858 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009914 other downstream 2267949 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009912 other downstream 2279753 4286366 ~ 4286480 (-) True XLOC_005112
TCONS_00009972 other upstream 405113 7223789 ~ 7235103 (-) True XLOC_005159
TCONS_00009977 other upstream 684286 7502962 ~ 7503098 (-) True XLOC_005164
TCONS_00009989 other upstream 1625228 8443904 ~ 8444021 (-) True XLOC_005174
TCONS_00009996 other upstream 2041517 8860193 ~ 8860307 (-) True XLOC_005180
TCONS_00010002 other upstream 2230856 9049532 ~ 9051178 (-) False XLOC_005182

Expression Profile

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