RNA id: TCONS_00009973


Basic Information

Item Value
RNA id TCONS_00009973
length 1073
RNA type mRNA
GC content 0.38
exon number 7
gene id XLOC_005160
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 7237666 ~ 7253270 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCGCACCGGAAGTGTGAGCTTGCTGAGCTACAGCTGTCTCTCTTTCTCGCCGCTCACATTCGCTTTTAACTCAGGGAAACACAGTATTGCTGAGCTGTTTCGTAGCAATAATATCGGACAGATACTAGAATCGGTAAATCTGGGGCGGTACACACAGTAAGGCAGCATGGCATTAAAGAGAATACAGAAGgaacttCAAGACTTGCAGAGGGATCCTCCAGCTCAGTGCTCTGCTGGACCAGTTGGTGATGACTtgTTTCACTGGCAAGCAACAATAATGGGACCTAGCGACAGCCCATACCAAGGAGGAGTCTTCTTTCTCACAATTCACTTTCCAACAGACTATCCTTTCAAGCCGCCAAAGGTAGCGTTTACAACAAAAATCTACCATCCCAACATTAACAGTAATGGAAGCATTTGCCTGGACATCCTGAGGTCGCAGTGGTCTCCAGCACTTACAGTTTCAAAAGTTCTTTTGTCCATATGTTCATTGCTTTGTGATCCAAATCCTGATGACCCCTTAGTCCCAGACATAGCACACATCTACAAATCAGACAAAGAAAAGTACAACAGACTAGCAAGAGAATGGACCCAGAAGTATGCAATGTGAAGACTTAATGGACATTTTTTTAAGTCACGAATCACTGTAAATTCTAGCATCTAAAAGTAAGATTAGGTTATATTATTAAACACATTGTACTGTTAACATTTACCATCTGAAATGACCAATAATAATAGCTGAACTAGTATTTTGAAGGGGACTGtgcactgcacaaaaaaaaaaaagacaataagcTTTTTATTGGTTTTGTGCATTTTGGTCATCCCCCGCAGTGGTGTTGGGCACTTTGTTTTCTTGTTTCATAAATCCTATTTAAGATTGGCATGATGTTATACAACTACAGTTACCCTACAAGTGGGCAATTAAGAAATTGAAAGCCGTTTTATTGTATCTTTCATTCAGTTgattacttttcttttcttttagatatttttattgtatAGTTATGAGCAACTATACTcaatctattttttcttttttttattttgcattaaaatttgtttaaaagtg

Function

GO:

id name namespace
GO:0031398 positive regulation of protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0031625 ubiquitin protein ligase binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0061631 ubiquitin conjugating enzyme activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2735 Predicted to enable ubiquitin conjugating enzyme activity and ubiquitin protein ligase binding activity. Predicted to be involved in positive regulation of protein ubiquitination; protein K48-linked ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human UBE2D1 (ubiquitin conjugating enzyme E2 D1).

Ensembl:

ensembl_id ENSDART00000035762

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010799 lncRNA downstream 94836 7142467 ~ 7142830 (-) True XLOC_005157
TCONS_00011093 lncRNA downstream 154293 7070639 ~ 7083373 (-) True XLOC_005156
TCONS_00011092 lncRNA downstream 192972 7017519 ~ 7044694 (-) True XLOC_005155
TCONS_00011091 lncRNA downstream 744574 6387835 ~ 6493092 (-) False XLOC_005151
TCONS_00011094 lncRNA upstream 50295 7303565 ~ 7322951 (-) True XLOC_005162
TCONS_00011095 lncRNA upstream 152818 7406088 ~ 7441307 (-) True XLOC_005163
TCONS_00009987 lncRNA upstream 547924 7801194 ~ 7854216 (-) True XLOC_005169
TCONS_00010800 lncRNA upstream 750239 8003509 ~ 8010560 (-) False XLOC_005170
TCONS_00011096 lncRNA upstream 750239 8003509 ~ 8073263 (-) True XLOC_005170
TCONS_00009971 mRNA downstream 2751 7193779 ~ 7234915 (-) False XLOC_005159
TCONS_00009970 mRNA downstream 80139 7149448 ~ 7157527 (-) True XLOC_005158
TCONS_00009969 mRNA downstream 332291 6880598 ~ 6905375 (-) True XLOC_005154
TCONS_00009968 mRNA downstream 356972 6566323 ~ 6880694 (-) False XLOC_005154
TCONS_00009967 mRNA downstream 418990 6566233 ~ 6818676 (-) False XLOC_005154
TCONS_00009976 mRNA upstream 15122 7268392 ~ 7280551 (-) True XLOC_005161
TCONS_00009978 mRNA upstream 335923 7589193 ~ 7607114 (-) True XLOC_005165
TCONS_00009979 mRNA upstream 356658 7609928 ~ 7639120 (-) True XLOC_005166
TCONS_00009980 mRNA upstream 400593 7653863 ~ 7655322 (-) True XLOC_005167
TCONS_00009981 mRNA upstream 446362 7699632 ~ 7710563 (-) True XLOC_005168
TCONS_00009972 other downstream 2563 7223789 ~ 7235103 (-) True XLOC_005159
TCONS_00009948 other downstream 1819326 5399680 ~ 5418340 (-) False XLOC_005137
TCONS_00009917 other downstream 2936290 4298227 ~ 4301376 (-) True XLOC_005113
TCONS_00009915 other downstream 2936291 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009914 other downstream 2939382 4295549 ~ 4298284 (-) False XLOC_005113
TCONS_00009977 other upstream 249692 7502962 ~ 7503098 (-) True XLOC_005164
TCONS_00009989 other upstream 1190634 8443904 ~ 8444021 (-) True XLOC_005174
TCONS_00009996 other upstream 1606923 8860193 ~ 8860307 (-) True XLOC_005180
TCONS_00010002 other upstream 1796262 9049532 ~ 9051178 (-) False XLOC_005182
TCONS_00010005 other upstream 1863782 9117052 ~ 9117178 (-) True XLOC_005184

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000047_01831728_01834017.mRNA True 374 mRNA 0.46 5 CI01000047 1831728 ~ 1834017 (+)
bowfin (Amia calva) TU175613 True 1993 TUCP 0.35 7 CM030139.1 7066943 ~ 7073536 (+)