RNA id: TCONS_00009980


Basic Information

Item Value
RNA id TCONS_00009980
length 980
RNA type mRNA
GC content 0.38
exon number 3
gene id XLOC_005167
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 7653863 ~ 7655322 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aTTCAAACTCTTTTCTGATCAATGTCCCTCAACCTATTATAATGATATGGACTctttttgtttgttgctgtccAATTATTTCAAAATCTCCCCAAGACTTTTAATACTCTTTGCTTGATCAGAAAAGGGTAGTGTGCTTTAATGCTTTTCAAACTACTCTAACTAATATTAAGCTTTAAAAGGTTTTCATGGCTTTTCCTTTTCTGCTCTCAGGCCCTCAGACCCCCTGTGAAAGAACAGATTTGCGAATGGCTATTGTAGCAGATCATCTCGGCCTGAGTTGGACTGAGATGGCCAGGGAAATGGAATTTTCAGTTGATGAGATAAATCAAATCCGTGTGGAAAACCCCAACTCATTGACGGCTCAGAGTTTCATGCTATTAAAGAAATGGGTTAACAGAGATGGTAAAAACGCTACAACGGATGCCTTAGCTGCGGTCCTGACTAAGATCAATCGGTTGGATATTGTGACATTGCTGGAAGGGCCGATATTTGACTATGGTAACATTTCAGGCACAAGATGTTTTGCAGATGATAGCGCAGTTTCCCAGGAGCAGGCTGATGGTAAAGTTTAGCCCCATCTACCTGAACTCTGCTTCTCTATGTTTCTCACAAATCTGTAGATTCATAGAACCATCATGGCAAAACACTCTAAATTCAAATCCAGTGTAAACTTAAACTCAAGTTTAAGTTTAAATCTCAATCTTACTTTCTAATCGATTAGATTCGCCAATTATGAGCACTGTTCTTTTCCAGCCTGGTGTTGGACCAGTCAGGGATCAGTGTGATCATATATATTGATTTAGtatgattgtgtgtttgtatgaaaGCATTAAAGCATGCTGCTATAAAGTACATAAGCTAATGCTGAATCAGAACTTAATCCCATCTCAGAAGTGCATATCACATTAGAGACCATACTGCTCTATTACCCATTCATATGAGGTCACTAAATGCACTTGCTTAAtacatacatttgt

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-060621-2 Predicted to act upstream of or within signal transduction. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human ANK3 (ankyrin 3).

Ensembl:

ensembl_id ENSDART00000181162

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011095 lncRNA downstream 212556 7406088 ~ 7441307 (-) True XLOC_005163
TCONS_00011094 lncRNA downstream 330912 7303565 ~ 7322951 (-) True XLOC_005162
TCONS_00009974 lncRNA downstream 400626 7247724 ~ 7253237 (-) False XLOC_005160
TCONS_00009975 lncRNA downstream 400645 7247740 ~ 7253218 (-) True XLOC_005160
TCONS_00010799 lncRNA downstream 511033 7142467 ~ 7142830 (-) True XLOC_005157
TCONS_00009987 lncRNA upstream 145872 7801194 ~ 7854216 (-) True XLOC_005169
TCONS_00010800 lncRNA upstream 348187 8003509 ~ 8010560 (-) False XLOC_005170
TCONS_00011096 lncRNA upstream 348187 8003509 ~ 8073263 (-) True XLOC_005170
TCONS_00011097 lncRNA upstream 384662 8039984 ~ 8046473 (-) True XLOC_005171
TCONS_00011098 lncRNA upstream 733008 8388330 ~ 8394645 (-) True XLOC_005173
TCONS_00009979 mRNA downstream 14743 7609928 ~ 7639120 (-) True XLOC_005166
TCONS_00009978 mRNA downstream 46749 7589193 ~ 7607114 (-) True XLOC_005165
TCONS_00009976 mRNA downstream 373312 7268392 ~ 7280551 (-) True XLOC_005161
TCONS_00009973 mRNA downstream 400593 7237666 ~ 7253270 (-) False XLOC_005160
TCONS_00009971 mRNA downstream 418948 7193779 ~ 7234915 (-) False XLOC_005159
TCONS_00009981 mRNA upstream 44310 7699632 ~ 7710563 (-) True XLOC_005168
TCONS_00009982 mRNA upstream 102341 7757663 ~ 7824291 (-) False XLOC_005169
TCONS_00009983 mRNA upstream 102341 7757663 ~ 7854216 (-) False XLOC_005169
TCONS_00009984 mRNA upstream 125665 7780987 ~ 7806007 (-) False XLOC_005169
TCONS_00009985 mRNA upstream 127939 7783261 ~ 7807298 (-) False XLOC_005169
TCONS_00009977 other downstream 150765 7502962 ~ 7503098 (-) True XLOC_005164
TCONS_00009972 other downstream 418760 7223789 ~ 7235103 (-) True XLOC_005159
TCONS_00009948 other downstream 2235523 5399680 ~ 5418340 (-) False XLOC_005137
TCONS_00009917 other downstream 3352487 4298227 ~ 4301376 (-) True XLOC_005113
TCONS_00009915 other downstream 3352488 4297857 ~ 4301375 (-) False XLOC_005113
TCONS_00009989 other upstream 788582 8443904 ~ 8444021 (-) True XLOC_005174
TCONS_00009996 other upstream 1204871 8860193 ~ 8860307 (-) True XLOC_005180
TCONS_00010002 other upstream 1394210 9049532 ~ 9051178 (-) False XLOC_005182
TCONS_00010005 other upstream 1461730 9117052 ~ 9117178 (-) True XLOC_005184
TCONS_00010008 other upstream 1690042 9345364 ~ 9345485 (-) True XLOC_005187

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000047_01558151_01580512.mRNA True 10262 mRNA 0.44 17 CI01000047 1558151 ~ 1580615 (+)
tiger barb (Puntius tetrazona) TU125796 True 10834 TUCP 0.42 4 NC_056710.1 1820519 ~ 1831991 (+)