RNA id: TU28033


Basic Information

Item Value
RNA id TU28033
length 2577
RNA type TUCP
GC content 0.48
exon number 3
gene id kcna7
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10752759 ~ 10842507 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGCATTAGCTGCTCAACTTGTGGATCAAGTCTTAAACCACAACACAGGAGATGAACAAAGGTTGATAACCACTACAATAAAAATCAAGAACTCAAATCCGGAGACCGTTCAATGTcgatttttattaaacaactCTGCAGTACTGCATAACACCCAACAGAGCAGAATAAAATTATGACAGCTCCTCCTTGGCAAGGCGGTCTTTCTTGAGGGGTCCCTGTTAACACAAGAAAAGATTGGTTACCAGCTGATTCAGCTCCTACCTTTGTGTATATCAGTTTAACTGATTTCACAAGTGTCATCAGAGAGTGAACAGGGAGAAAGCACAAGAGGGGTACCACTCCCCTGCCTCACTGAGCTTTACTCTTGCACTGGAATGGAACCCAAATCTCAGATGGACAGGCTGAAACAGGTTACGATCAGTGCACTGATCCGAGGGGGGCCAAGGGCATGGATGTGGTACAAAGTTAAGGGTAGAACCCACAATGCCTTGGGGCAGCTCAACTCATGGTGACCTCTTGGGGCCCCTAGTCTAATTTTGGGTCCTCAAATTATAAACTTTATGACCACTGCAGTCATGCCCTCACCATGAAGCTTTTCTTTTCCTCGACGGTCTGGAAACGTCCATGACCAAACTTGGAGGTGGTGTCGATGAATTTGAGGTCGATCTTCTCCAGAGCACGGCGGCTGGTCTGGACCAGGAGAGACTTGCGCAAGGTCAAAACCCTCTTTTTCGTTCCAACCACACAGCCTTTCAGCATCAGGAAGTCATTGGTCACCTCACCATAATGCACAAACCCACCCTAAAAGGCAGAAgttaaaaccattttaacaaCAAGTAAAAAAACCTTGAGTAACTGAGAAGCCCACAAGGCAGACATCTGCACACTCACCAGGGGGTTGATGCTCTTGTTGGACAGATCATAATCCGTAGAAGCATTGTTCTTAACTACTTTTCCATCCTTGGTGTGATAGCCTACACCAAGCTTGTAGATCTAAGAAGAACAAAACCTTGTAAGAAACTATACTTGATCCTACAGGAAAGCCTGGGTGTAATTCTGAGGTCTCACCTTCTTGTTGATCTCAGTGCGGTGATGGTAGCCTTTCTGACCGGCACGAGCCACAGAGAAAGCCACACGGGCAGGATGCCAGGCTCCAATACAGGCCACCTTACGCAGACCACGATGGGTCTTACGGGGCAGCTTCTTTGTGTGCCAGCGGCTTGTCACCCCTTGTATCCATGACCCTTGGTAACACCAATAACGTCAATCATCTCGTCCTGGCCGAAGACTGTGGCAATAGGAATAGGCTGCTCAAGCTTCTCTCTAGCCCAGTCAACCTTATCGGCAATGGAGCCTCCATTCAGCTGAATCTCCATCAAGTGAGACTTCTTCTGTCGGAGGGGCAGCAGGCGCCTGTGTGTGAGCAATGATGCGAATGACCTGGCAGTACTTCTTCATGGTGGCAAAGTCTTTCTCCAGCTGCTTCTTGCCCTCTTCATCTTGCCACCTCTTGCAGTACTTGGTAAAGGCCTTCTTCTTGGACTTGTACCTGAGCACGGCACAGAGAAAAGTTGGCACAGTTCCTTCATAGCCCAGCGGGCCAGTGGAAGGAGACTGGGCATGGCTGCTTGCCCATCCTCATGGTAGATGGGGGGGGGCGTTGACAGCACTAGGTCATTTCGGCTCATGGCACGGCTTCTAAGGAGCCCTTTCCACCGGCCAGAGGAGCCCGGAGCTCATCAGGGCACTAGGCACCTGAGCGGAGCTGCACCACACCGACACATTAGACTGGCTCAGAAAAACATGACCATGTTTAATCTGGCCAGCAACCATCTGCTCCAGACTAAACCTAAAACAGTGATCAAAAGCCAATTCTTACCAGTTCTTATAGAAGCGACGCTTGCACTCATCACTAATGTGCTCAGCAAAGATGGTCTTGATGGAGCGCAGGCCACGAGGGGTCATAACGTATCCAATAACACCCACTACAATCATGGGAGGAGCCTCCACAATAGTCACTGCCTCGACCACCTCTTTTTTGTTGACctctagaagaaaaaaattgaaataagtCACCACAACTACGAACTTAACTTCAGGTTTACAACTAGAAATTCAGGCTATTAAACTGCTCAGAATTCGACATTCAGCAAGGGCTCAAGGCCCAAATATGTCCGCCCGTCGAGGCTCTCATCACCGGCAGACAACCTACTGCAGAATAGATTTCACATTACGTGCGGTAAAACTGAACGCTTTAACTTACTTGAGCCGGGTCTGTCGACCTCACGGACAATGTGGGTCATGCCAGCCTTGTAGCCAAGGAAAGCAGTCAGGTGAACAGGCTTGCTGGGATCATCTTTAGGGAAACTCTTCACCTTGCCACGATGGCGTTTGCACCTCTTGCGGGGCAGGAAGCCCAGAGAGCCGTGGCGTGGGGCCGAAAATTTACGGTGAGACTACAAAGAAAACGCCGAGTTAGAACATGGCTCTTCTATAGCAACGTTTAACATTGTGGGGAAACTTACATCTTTGTAACTTTAAAACTACATAAGATTTAAAAGTTGTCATTTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28023 lncRNA upstream 76000 10702294 ~ 10702806 (+) True G18794
TU28019 lncRNA upstream 77170 10700787 ~ 10701636 (+) True G18790
TU28018 lncRNA upstream 77433 10700787 ~ 10701373 (+) False G18790
TU28021 lncRNA upstream 78187 10700277 ~ 10700619 (+) True G18792
TU28016 lncRNA upstream 85056 10691890 ~ 10693750 (+) False LOC122333995
TU28048 lncRNA downstream 5502 10787355 ~ 10789666 (+) False G18807
TU28045 lncRNA downstream 5763 10787616 ~ 10789666 (+) True G18807
TU28062 lncRNA downstream 29971 10811824 ~ 10812786 (+) False G18817
TU28064 lncRNA downstream 29971 10811824 ~ 10812786 (+) True G18817
TU28076 lncRNA downstream 45225 10827078 ~ 10828835 (+) True G18828
XM_043225671.1 mRNA upstream 9409 10711327 ~ 10769397 (+) True cacng2a
XM_043231867.1 mRNA upstream 80266 10693698 ~ 10698540 (+) True LOC122333995
XM_043235903.1 mRNA upstream 100125 10672523 ~ 10678681 (+) True eif3d
XM_043228158.1 mRNA upstream 117722 10645904 ~ 10661084 (+) True sstr3
XM_043235677.1 mRNA upstream 140210 10626162 ~ 10638596 (+) True rac2
XM_043233860.1 mRNA downstream 35877 10817730 ~ 10820947 (+) True ifi35
XM_043233861.1 mRNA downstream 36042 10817895 ~ 10820947 (+) False ifi35
XM_043229804.1 mRNA downstream 52734 10834587 ~ 10842507 (+) False kcna7
XM_043229794.1 mRNA downstream 53879 10835732 ~ 10842507 (+) False kcna7
XM_043235139.1 mRNA downstream 92384 10874237 ~ 10885623 (+) True LOC122341641
TU27725 other upstream 744339 10025818 ~ 10034467 (+) True G18574
TU27625 other upstream 979051 9798815 ~ 9799755 (+) True hbbe1.3
TU27611 other upstream 1028926 9739796 ~ 9749880 (+) True G18491
TU27599 other upstream 1082247 9694632 ~ 9696559 (+) False aanat2
TU27325 other upstream 1593225 9184528 ~ 9185581 (+) False LOC122341719
XR_006250543.1 other downstream 380501 11162354 ~ 11162443 (+) True LOC122342197
TU28257 other downstream 551906 11333759 ~ 11335825 (+) True LOC122331261
TU28236 other downstream 587040 11368893 ~ 11369752 (+) True G18949
XR_006249731.1 other downstream 991348 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other downstream 991348 11773201 ~ 11833924 (+) False kcnc3a

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU10347 True 2441 TUCP 0.49 4 NC_035898.1 3449221 ~ 3452666 (+)