RNA id: XM_043235139.1


Basic Information

Item Value
RNA id XM_043235139.1
length 4134
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC122341641
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10874237 ~ 10885623 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTGTTGTCCCCTCACCGCCTTTCATGAAGATACCTTACCTTACTTCAGCACTCTAACCTTCTCGGCGCGAGAATTTCggcattcactttttttttttttttttaccttcatttCGGATCAAACTTCGCTCATTTACAGCTTAAAGTCTGCCATTTGTGATCTGACTGCTGGAAAAGTAGAGTTGACGCTAATGCTCGCAGTGTCAGAGGTGTATTACTGCTCATGTTGTTCACCGCTTGCATGCCAATCCTCCAGAAACTCGCGCGTAAAGAACGACCTGAGATTAAAAGGCGCGTTTTAAACAGATAAGCGTGGAAGTACAACTCGACGTGGACCTTCTCAGACTGGACGTTGGAGATGATATGGGAGGCTTCTGCCGTTTCAACTACGTGAATCAAGAGTTCTTCTGGACATTTCGTTGATTTTGCGTGAAACTGACAGACTGTATTATCAATGTGGTTTTCGCCGAAGATACGCGTGGCCCGAGACTCACCTAAACGTTGACACGTCTTGGGAGTGATGCACTGGCTTCCCCTGGTTGCCATGGTGATCGCCTCGGCCCTGCCTTTCCCTCAAAGTCCTGTGCCCAGGCTTGTTGCCGCAATGATAGAGCCTGGcagaaacaacagcaacagcagcagcgtCCCAACAGCTAACATCAGCATGCCGACCAACTCCTCAGTGGACCACGACTCTTCTCACAACAACTACAGCACACAAGACAGAACAGAAGCTCCTCACAGAACAGACGATAAGCAGAGCACAATTGAGGAGGACCGTATATCCAAAGGTAGAGAAAATCTTCTAACAGGTAGGACTACCGGAGCAGATGCCTCCAGGCCGCATTATTCTAGGAaatacaaatcacaaaaaatagCCAGTTCCCAAAGCAACGATATTCTCAAGGACTATCAGCTTGAACCTAGTCAGTTCCATGAACAAAGCAGTATTGAGGCAGAgacttttcttaaaaatgacagGAGCGCAAGAAGTGAACTGAAAGATGGGCCTCTTGAAGGTCCGAGCTCTCCAGGGCAGGAACATCTGGATGAAGCTCAGACAAATGCAAAAGAGTTGCTGCAGCAATCTGGAGGCTTTGGGTTTGATGACATAGGCCTTCGAGAAGAAGATCAGCTGCTTTTGCTGGACGCCCATCCACGGGTGCTCTTCTCCCCAGCCCTTTCCCCACCCAAACACCCGCCACTGCTCTTAATGCTAGAGTTGGGCTTATTGGCCGATGACGTTGAGGACGAGGAAAGCCACATGATGGATGCTACCACGTCTGGTCACGGAGGCGACAAAGAAACATACAGGAACTTACTCTTGGGTCTCTCTGATTCTGACGGCCCCATTCCAGGGGTCCGGCGCAAGCGTCAGGCCGCCCACAGCGCACAGGGCATCGAACGCTCCGTCTGCGAGGCCGAAAGCGGGTGGGTGACCAACAAGAGGACGGCGGTGGACTTCCGGAGCAACACAGTCACTATTCTGCAAGAGATCCAAACCCAGACGGGACCTCTCAAGCAGTATTTCTACGAAACAAAATGTCGTAAGCCTGATCCAAATAGGAAAGGTGAAGTGCAAGCGGTGGAGGGAGCCGGCTGCTTGGGGGTGGATAAGAAACACTGGATGAGCAGGTGCGAAACCAAGCAGTCATACGTACGTGCGCTCACCTCGGATGAAACCAAGAGAATAGGGTGGAGGTGGATCCGTATTGACTCCTCCTGCGTTTGCGTGCTGCTCACTAGAGGAACGTACTACACTGAGAAGAAGTTGGAGAGGGGAAGAGAGCGAGAAGGCAGAAGGTACCGATAGCTCAGACTGTCTGAATAAAGGATTGACGCGGAGTTGAAAGATCATATGAATTAAGGAGCGTTTAAGGGAGTGTATCTGTTCTGGTCCACTGTGTGggggatattttttttccagatgttCCTGCATCTCGCTTGACAATCTCCCTGTGTCTCACTGAGGGATAGTCATAAaatcaccctcatgttgctcaaaacctgtatgatttattttttttcctgtggaacacaaatgaatacAGTGGAGTTTTTTTGGACACTAAGTCACTCTTAAAGATGTTTGAATTTCATTGCATATACTGAAAATCAAACCAATTGGCATCTGCAAACAAATATTGgagttcatttaaataacatatatgACGTTATATATGATGTTACTCAGAGTTTGACTCCCAAAAGGACTTTTTGTTCtggttttaaacaaaatttaaagATCAATAACCAAGACTAGCGTGCATgtgggattaaaaaaaaaaataacctcgttttgatattttttttaacatgcaatgcaaaaaaaaaaaagatatttttaaatgtggcttaagtgtccaaatactttatatttagtgCATTTTATACAACAAAGCCTGCTGACTTTCAAGTTGTCACGCTTCAAAAAAGTACTATTAAAATGGTCCACGGATATGAAATGCATCAAAGTCCCTTTTAAGGATAATAAGTTCACTCTGCAGCCATATTTTCAATGCCTTAAGGTGGatgttttaaaggattattTCAattccagaataaaaaaattcctGAAATTGTACTTATCCCAGTGTAACTCAAGATGTtcgtgtctttctttcttcagttgaaAAGAAATTCTTTCTTCAGTTGAAAAgatttttgaggaaaacattccaggattttCCTCCATAATGGACTTAAATGGGAATGAACGGTTTAGATTCTAAAATGCAGCTTGAAAGATCTAGTGCCGATCTCATGCATAATTTTTTACCCTACCCTACCtttttaaactaaagcacacagacaaaaaacTAACCATGTGTGTCCATTCCAATTACCTAATGCGCATTtgtggttaatttttttttttttcttagaaaaagacttttttagttttgctaGATAAGACCCTTGTTTCGTGGCAGGGATCATGATGCAAAGATCTGCCACTTCATGGCttaaaatgttttcctcaaaaaccttcatttcttttcgactgaagaaagaaagacatgaacatcttggatgacatgggggtgagtacATTATGAGGAAAATTTTATTCTTGAAGTTAACTAATCCTAAAGGTATGCAAGACCAGCTCTTACCTATGTGAACAGGAAAATAACTGgcaaattaacaattaattaatatactttaagACATGAACCGTCCCATCAATGCTGTTTTTAAGGCActataaagcatattttaaaggTTGGTCCTGATCTCACATTCATATGAAAAACAGGTTCATAGCTACCATTCGTAGCAATAAAAGTGAACTGTCTAGGGTAATAATATACAGTCTTTGGTGAAATTCCAAGTTTTCTGAAGTCATGTAAGCATGAGGTTTAAATTGAAGTCGTTCACTTGTTTTTATCTAGGTGCGTTCACTGTAACCTATTTGGCGTTTCAAGAAACAGTATACGGGTTTGAAGTGAAATGAGGTGGCGATGAGTTCCTCCGCGTACACGTCTCGCTAGGCCAGTGTGTAAACTCACACAAACAAGAAAACCTCAATACTGAgatcaattcttttttttcgtatatattgttgcatttgttttattgtatctATAGTATACAGACAATAAGTTATTACTGTTGAATTAGCACGTAAGCGTAAGTActtgatattaatatatttctgtacaATATGTGAAACATATACATCATGCAAATATGTGCGTATTTATAATAACCAAAAAGGAACCGAGCTGTATAGAGGTCAGCAGAATTTGTAATCGCAGACGAGGGCTTTCTCATAAGTGTCCTTCAAACGCCTGTCTCAAAACATGTGCCTCTTCAGATTCAGTGTCAGCTGCCATGGTTCACCCATGTACTGTTCACTCAGAAAATGTTACAGAAATACAGTCAAAATATGAAATGTCCCCGGTTACTGTATTAAGAAAGCTGTGGAAGTCAGAACACGGGGTTTGATGTCATTTTTCACATTGAGTCATTGTAATAAAGTATTATGTAATCTTTGTAAGGTAGATACTtttgtatatgattttttttttactaagtaGACGGAAGAGCAAGAGGGCCTTAtacaaagtaaaatatatgaatatgtgaTTGTAgttctatttgttttataataaaaaaaaacaggaagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28035 lncRNA upstream 31731 10778806 ~ 10842506 (+) True kcna7
TU28076 lncRNA upstream 45402 10827078 ~ 10828835 (+) True G18828
TU28062 lncRNA upstream 61451 10811824 ~ 10812786 (+) False G18817
TU28064 lncRNA upstream 61451 10811824 ~ 10812786 (+) True G18817
TU28048 lncRNA upstream 84571 10787355 ~ 10789666 (+) False G18807
TU28101 lncRNA downstream 34737 10920360 ~ 10920871 (+) True G18847
TU28072 lncRNA downstream 46748 10932371 ~ 10970464 (+) True G18824
XR_006248664.1 lncRNA downstream 126586 11012209 ~ 11018702 (+) True LOC122333718
TU28146 lncRNA downstream 135705 11021328 ~ 11096418 (+) True G18879
TU28166 lncRNA downstream 191421 11077044 ~ 11078732 (+) True G18894
XM_043229804.1 mRNA upstream 31730 10834587 ~ 10842507 (+) False kcna7
XM_043229794.1 mRNA upstream 31730 10835732 ~ 10842507 (+) False kcna7
XM_043233860.1 mRNA upstream 53290 10817730 ~ 10820947 (+) True ifi35
XM_043233861.1 mRNA upstream 53290 10817895 ~ 10820947 (+) False ifi35
XM_043225671.1 mRNA upstream 104840 10711327 ~ 10769397 (+) True cacng2a
XM_043233932.1 mRNA downstream 63055 10948678 ~ 10954729 (+) True akt1s1
XM_043231371.1 mRNA downstream 92526 10978149 ~ 11006634 (+) True mybpc2a
XM_043231377.1 mRNA downstream 92526 10978149 ~ 11006634 (+) False mybpc2a
XM_043231384.1 mRNA downstream 92526 10978149 ~ 11006634 (+) False mybpc2a
XM_043235291.1 mRNA downstream 393114 11278737 ~ 11281741 (+) True cldni
TU28036 other upstream 92384 10752759 ~ 10781853 (+) False kcna7
TU28033 other upstream 92384 10778806 ~ 10781853 (+) False kcna7
TU27725 other upstream 839770 10025818 ~ 10034467 (+) True G18574
TU27625 other upstream 1074482 9798815 ~ 9799755 (+) True hbbe1.3
TU27611 other upstream 1124357 9739796 ~ 9749880 (+) True G18491
XR_006250543.1 other downstream 276731 11162354 ~ 11162443 (+) True LOC122342197
TU28257 other downstream 448136 11333759 ~ 11335825 (+) True LOC122331261
TU28236 other downstream 483270 11368893 ~ 11369752 (+) True G18949
XR_006249731.1 other downstream 887578 11773201 ~ 11833924 (+) True kcnc3a
XR_006249728.1 other downstream 887578 11773201 ~ 11833924 (+) False kcnc3a

Expression Profile