RNA id: XM_043235967.1


Basic Information

Item Value
RNA id XM_043235967.1
length 6858
RNA type mRNA
GC content 0.46
exon number 17
gene id rbbp6
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13698537 ~ 13710865 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTCTTTGCCCCTGCGCTTTCTGCGGAAACCCCTTGAGTGCGCGTGCGGTCGTTAGGTTGTTTTCGCAACCCTGTGCAGTAGTCAGCACGATCAAAGTGCGCTTTAGACATCTGTTTTGGCCATCAGAGTTGAGGACGGGGCGACTGGATTACCGCGGCAGTATTTTGATAAAAGGAGAACCGTTGTGCTTGATCATTTTGTTTTAGCGTTTTCTAATGGTTTTGCTgtagtcttttgtttttgtacgtGTGATGGACGCCATTTTAGGTTGATCACACTTACTAGCTGCTAGCCACATTGTTTCAGGCCTTGCTTCAAACGACGTCggtttgtgttttgttgagaTTTGGACTACACCGAACAAACATTTCGGAGGGACTTCGAATCGGACTTTGGGGAGACATATTTGACCGGACTCTACGCGTTCACCCATACGGACACTGTTTGAACTGTATATTTCTTTATCAGAGTTGGACCTTACGGACAGCTCGCGGCTAACCGCCATATGGTCCTGGGACATTGAGAAACAGCAGGAGTGTTTCTGGCTTCTGCCAGGAAATTCCGTGGACTAAAAGTCACTTGCGTCTTTAAGATTTCGTGTTACACTTGATCACGGTCTCTTTGAACacttgatattttcagttcGCAGTTATTCACGTGAGGCAGAATCCACACGACCCTCCTTAGTGGTGACTCTTGATTTAAAAGAGTGTTGAGATGATGAGCAAACATGGCTATTATTCTTAAACTGTTAAGCTGATAAACTGACATTGAGTAAAGGTTGATCGCTGGGAGAGCCCAGGCGGTCGTGCGAATTGTAGTTGAGTTTGGTTGTGTGTGGTGGTGTCTGACCACAAGGATTGTTTAAACATGTCTTGTGTCCATTACAAATTTTCTTCTAAACTTAACTACGACACGGTGACCTTTGATGGCCTTCATATCACGCTCAGTGATTTGAAACGCCAGATCATGGGGCGAGAAAAGCTGAAGGCCGCGGATTGCGACCTGCAAATCACCAACGCTCAAACTAAAGAAGAATACACCGATGATGGAGCCCTTATACCTAAAAACTCGTCTGTCATCATCAGACGAATCCCTATTGGAGGGCTGAAGTCGACAAGCAAAACATTTGTCATcgaTCGATCTGAACCAAGTGGATCTTCAAAAGCAATTGATGATTCTTCATCCATTTCACTGGCCCTGCTTTCAAAGACAGCCAATCTTGCTGAAACAAATGCATCAGaggaagacaaaataaaagcaatgatgTCTCAGTCCAACCATGACTATGACCCAATCCATTATGCAAAGAAGCTTGTTGGTCCACCTCCCCCAAATTACACATGCTTTCGTTGTGGAAAAACTGGACACTATATCCGAAACTGTCCAACAAATGGGCAGGATCGAAGTTTTGAAGCTCCTCAACGGATAAAGAAAAGTACAGGAATTCCTCGGAGTTTCATGGTGGAGGTTGATGATCCAAACAGAAAGGGAGTCATGCTGACTAACAGTGGGATATATGCCATTCCTACTATTGATGCTGAGGCCTATGCTATTGGGAAGAAAGAAAAGCCACCGTTCCTGCCCCAAAATCAGTCTTCATCCTCCGAGGAAGAAGATCCGGTACCCGATGAGCTGCTCTGTTTGATCTGCAAGGATCTTATGACAGATGCTGTAGTTATCCCCTGCTGTGGAAATAGCTACTGTGACGAGTGTATTCGAACATGTTTGCTGGAGTCTGATGAACATGTTTGCCCAACCTGCAAACAATCTGATGTGTCTCCTGATGCACTGATCGCAAACAAATTCTTGCGCCAAGCGGTGAACAATTTTAGGAATGAAACTGGATATACCAAGAGGATTCGAAAAGCTGCAGCTGCTCATCAAGCAGCTGCACAAGGAGCCCAAACACAGGCTCCTGCCCAGCGGCCACCTATGAGACTGGCAACCTCACGCCAGCAGGACCCTCTAATGGCCAATATTCCAAGCTCAGCAGCTGATAGCACCCCTCCCCAGAGCACACCTGCCCCTTTATCTCCTGTTAGCACTCATCAGCCTTCCAGCACCCCACCTTCTTCTAGCAGCTCTACAGTAAACAGTAGCAGTGCACCTGCAGCATCAAACTATAGCCCTGTGGTGAACTCTCCTCAGCACTCTACTAAGCAGGATGACCCTCCACCATCCAAGGAACCAGAGGTCCCAGCATCTACTGTTGTGCCATCAACAGACGCCACTGCCCCAACAACTTCTATTCCAATGGGATACCATGTCCCAGTAATTGGAAAGCCGAATATGCCTCAGCAGCACCACATGCATAGATCAGggcAGGCAAGGGCAGGTGGACCAAGGCCATCTGGAAGTCGTCCTGCATGGGATCCGTCCTCAAGTAGAGGGAGACCTCCTAGTGAACGACCACCAAGAACACAGCCTCCTCCAGTACAAAACCTTCCTCCTGTAGTCCCTCAAGTGTATGTGTCTCCTGCTCTTTTTCCTCCTCCACCACATCCTATGCCTCAGCCACCTGGTGGTGTTCCACAGCAGTATCCCATACAGTATCCTACAGGACAGCAGCCTCCCCCTCCCTACAACATTCCACCACCTGTATTTCCACCTGTCCCACCAAATGTGACTGCCCCATGGGTGCCTCCTGGTGCACAGCCACCTATAGCCAACCCCATCTCTACAATGCCAGCAACACCTTTTCTATCCAAGGAGGAGTTTTACCGTCAGCAGCGTAGGCTGAAAGAAGATTCCCAATGTCGATTCGTTACCAGGGAGAAGAAGTCCAAACTTGAGGAATTTACTAATGACTTTGCCAAAGAGCTTTTGGAGTACAGAAAGATCCAGAAGGAGAGAAGGCGATCTTACTCTAGGTCAAAATCTCCTTATAGGGATTCCTCCTACAGTGGCTCATCATATTCATATTCCAAGTCCCGCTCTAGGTCCAGATCACCACGCTCCTACTCTCGGTCAGTTTCCCGATCTCGGTCAAGATCCCACTCACGCTCCCGTTCTCGATCACGCTCCTACTCTCGCTCACCATACTCCCGCAGGGGCCGAGGTCGAAGCCGTAGCTATCGATCTAGGTCACGCACTCCAACATACCATCGCTCCCGCAGTAGGTCACCATCATATAGGGGTCGGGAGATAAGTGGAATGGGAAGTGGGATCTATCGTTCCCGCTCTAGATCCCCACTATATAGGAATCACAGTCCCAACAAGAAACTTCCACCCCCATCTCAAATCGAGGGTGAGCGCAAATATGCAGGAAGGTACAGAGAGCTACCTCCGTATGATCCTAAGGAATATTATGGCCGCAACATAGACCAAAGTGACCCCTATGAGAGAGAGCGATATCGAGAGTGGGAAAGAGAGTACAGGGAGTGGTACGATAAATACTTCAAGAGCTACAACAACCCACCAAGTAGTCAAATGCGAGGCCGTGCTCCAGGCAACAGAGACCAATATACCCCTGAGCGTTTTGCACCTCCTAGACCAAGAGAAAACTCTCCTTATAGCAGAGGACGTCGGGAGGATTATCCGCCACCACCTCAGAGCCACGGCGTCCCATCAAGAAGCAGAGGTGGCATGACATACCAAGAGAAGTGTGCTGAGAAGTATGGACACCTTCATGTTAACACCACTGGAGCAGGAAGAGGGCTTAACAAAGAGTTTTTGAAACCTGTTAAGGACCGAGAACCTGGTGGTAGCACTGCTGCAGACCCTAAGTCTATGAAGCATAAAAAACATCgcaaaaagaagagagaagatGGTGACCCCTTCAGTCACTCTGACTCTATGGATGAATCCAGGAAAGATGACCGTAAAGAGGATTCTATGCTGATGAATTCAAGTCGTGATGATGCCACACCTGTCAGGGATGAACCCATGGATAGCTCTACTGTGCCCTACAAAACTACTCCTGtgaaggagaagaaagagaagtcAAAAAGCAAAACGGACAAAGTTAAAAGAAAGTCTGAAAACAGTGGGCAGAAGAAGGAAGCATCGGGAAAGATGTCAAAACCTGCTAGAGAGAAAGAATCTGATGTGCCACGAGACAAAGTGGCTCCCACCGAACCAGCCATTAAGAGGGTCAAAGACGAACCATCCCACAAATCTGAACCAAGCAAACCTCAATCTTCAGAGTCCAAACTCATGCTCCCACGCAAGCTGATGCAGTCCAGGCCCATCAAACACCATCAGGAAGTAAAGCCCATTAAAGATGAGCTCAAAAGCAAGAAAGAATTGGTAAAAGACCCTGTAAAGCCAGATAAAATTCCTATTAAAGATGCCAAGTTCCCCAAAAAAGAGCCAGAGAAGCCTGTGAAAACTGAGGAAAAGATGCCTGCAAAGACAGTTGATactaaacaagacaaaaagaaacGAAAAGATGACAAGCCCCCTGCAAAAGACCTAGATGTTCCTCCACTAAAAGTAGCAAAAATAGAAGTTGAAGTAGCTAAAAGCTCTCCAAAACTTAAACCTAGACTGGATAGCGAAAAGCCAGTTGAAAAGGAGAAAGTAGCTATTCCATCTCTGATGGACATTAAACCAGAGCCTATAAGAAAGATTAAAATCAACAGGGAAATTGGCAAAAGAATATCTAGCATTGATCGACCACTTTCAGCTGAGGACTCTCCTCATGTCATGGGAAAGGGCAGATTGGACAAGTCTAGAGGAAAATTGAGGAGGAAGGTTCATGCTCCTGATGGGTCAGGGTCCATATTGGTTGATTACACCAGCACCAGTTCTACAGGTGGAAGCCCCATCAAAAAGTATGAAGACAAGCTTGACCTAAAGAAGACTGTGGTGAAGACCCTGGAGGAATATACCAATGACAGCTCCACCCCTGCTGAGGATGAAATTGTCATGATCCAGGTACCCCGTTCCAAGTGGGAGAAGGAGGACTATGACTCGGAGGACGATGAGTCCAAGGCTGCCAACAGAACAAGCAGCATCAACACATCCAGCTCTGCTCCTTCAGGAGAGAGCACTGCACTGAAATCAGCTGGCAAGGAGTCTCCAAATGCTGATAAAGCTCCACCAATCTCCAAAGAGGCAGAAGTAAAACCTTGCAAGGACTCCACATCTGGTGATAAGGAGAAAGATGCtgacaaagaaaaagacagagagcgAGAACGAGACCGAGGGAAAGAAAAAGACCGCAATAGCACTGCAGACCGTGAGGCAACTGACAAAAGAAAACCTAGTGTACCTAACCAGGAAAGAGAGCGTGCGCAGGAGAAGGGCAGTGACCATGGCAGTGAACGAAGCTCTTCTTCCCAGTCCTCCAGAGATAGACAAGCTGACAGGCCTGAACCTACCTCTAGAAAACCAGCAGGAAGGGAGACCACTACAGGCGTCCCCAGTAGAAAAACAGAGCATAGAGATGATACAAGAGACCATTTAGGCACTAGatcaaaagaagaaagaaatccaATTAGGAGGAGATCATCACTCTCCCGGCCCCAAAGGATAAAGGACTTGCACACAGACTCTGGAAGAAAGTCTCTCGAAGCATCTCAGGAGTCACAAAGTCCAAGTAGGAATAAAAGAGCATCATCGCAGAATGCCCCAGAGCCAAAACGAACAGGGCTGGATGACCACAAAGGAGACTGGCCGTGCAGTAAGGAAAGCCATGGTTCTAGGCATTCTGATGTACGTAACGCAAAAGACCGGGAACACAGGACTCCTCATAGAGCTTTGACTCCAGAGCCTAGGACTGATGCCGAGAAAGGTGGCGCGTATGGCGACCACATCAAAATCCCATCAGCGCGGTCCACGAGACTGTCTTCAGATTTAGCACGGGAAACAGACGAGGCTGCGTTTGTCCCTGATTACAGCGAAAGCGACAGCGAGACCTCAGACATTGAGAGCAAAACGGAGCAGAGAGGGCGAGACAGGGACAGCAGCGGCAGCCAGAGTCCAAGCCCATCTGGCAGCCACGGACACAGCAGCAGCCCCAGCTCTCCCGGCAGTCAAGAcagcaaaaagaagaaaaaggacaaaaaggagaagaaggaaaagaagaaacacaagaagcacaaaaaacacaaaaagcataaGAAACATACGAGCAATGAGTCTGAATCAGAGCTCAAaggacagaaacacaaacataagAAAAAGAAGTCTAAAAAGAGCAAGGACAAAGACAAAGATGACAAagatgagagcgagagagacgaACACAAGGCAAAAGTAtctgtttaattcattttaggtttaaccatttgtttgatttatgcATCTTTAAGCAGCattgggaaaaataaaaaatactgttctGCAGAGAAGTTTAATTAATGTTCAGATTGCATTGTTTTCgggatttgtttttgtttttcttcaatggttaacttttttttttttttggaccacGCTAACCTCTCCCATCAGTGCTAGAGAGTAGTTActtaaatgatacattttattttattttgggttcTGAGTTTTCAAAAATTTTTGGTTCTCATTTAAAACTGTTGCAGATTACATCATGGTTTTGCGTTAAGGCAACTGTAGAGGAAGCACTTTAGAAATGTGAATGTGACTGCAGATTTGCAAAATTTGCAAAGGATTGCAAAAGCCCTTTTGTACCTCATCTCTTGTACGTTTAATTTGGAGAGAGACACATCATTATGACAGTATGATAATATTGTTACAGAGGTAACAGAGTGGCATCCAGCCATTGGGGGCAAGCTGATTTACAAAGTGTATGTTTTTGCACTGTGAATATTTCCTCTACTCTTTCGTTTTATTCTAATTCACCTTCATAAGAGTAATTTAAATTATCTGCTGAAATGGAATTGCATATGTTTTGAGggtaataaatttttttcaggaaatataaA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10624 RBBP6; E3 ubiquitin-protein ligase RBBP6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29485 lncRNA upstream 254959 13409739 ~ 13443578 (+) False G19788
TU29498 lncRNA upstream 256388 13441686 ~ 13442149 (+) True G19798
TU29482 lncRNA upstream 259211 13435894 ~ 13439326 (+) True G19788
XR_006250477.1 lncRNA upstream 286619 13408320 ~ 13411918 (+) True LOC122341620
TU29473 lncRNA upstream 334807 13362886 ~ 13363730 (+) True G19780
TU29624 lncRNA downstream 76968 13787833 ~ 13792555 (+) True G19890
TU29625 lncRNA downstream 104488 13815353 ~ 13818222 (+) True G19891
XR_006250533.1 lncRNA downstream 203061 13913926 ~ 13920269 (+) True LOC122342149
TU29717 lncRNA downstream 229751 13940616 ~ 13943491 (+) True G19963
TU29750 lncRNA downstream 285605 13996470 ~ 13997081 (+) False slc16a3a
XM_043235988.1 mRNA upstream 15041 13649294 ~ 13683496 (+) True cacng3b
XM_043233748.1 mRNA upstream 65010 13532570 ~ 13633527 (+) False prkcbb
XM_043233747.1 mRNA upstream 73279 13532576 ~ 13625258 (+) True prkcbb
XM_043235210.1 mRNA upstream 170019 13521215 ~ 13528518 (+) False smarce1
XM_043233948.1 mRNA downstream 8071 13718936 ~ 13764372 (+) False LOC122339456
XM_043233946.1 mRNA downstream 27032 13737897 ~ 13764372 (+) False LOC122339456
XM_043233947.1 mRNA downstream 27032 13737897 ~ 13764372 (+) True LOC122339456
XM_043233945.1 mRNA downstream 27032 13737897 ~ 13764372 (+) False LOC122339456
XM_043233949.1 mRNA downstream 27032 13737897 ~ 13764372 (+) False LOC122339456
TU29192 other upstream 710624 12835381 ~ 12987913 (+) True LOC122332158
unassigned_transcript_277 other upstream 810476 12887157 ~ 12888061 (+) False LOC122332158
XR_006250478.1 other upstream 1169734 12519837 ~ 12528803 (+) False gtpbp1
TU28786 other upstream 1184816 12511926 ~ 12513721 (+) False G19326
TU28787 other upstream 1184816 12511926 ~ 12513721 (+) False G19326
unassigned_transcript_286 other downstream 202758 13913623 ~ 13913694 (+) True trnat-cgu
TU29734 other downstream 338625 14049490 ~ 14053032 (+) True G19973
TU29797 other downstream 407602 14118467 ~ 14119570 (+) True G20015
XR_006248644.1 other downstream 544625 14255490 ~ 14267791 (+) False abcc1
TU29992 other downstream 824314 14535179 ~ 14615408 (+) True G20148

Expression Profile