RNA id: XM_043233748.1


Basic Information

Item Value
RNA id XM_043233748.1
length 4138
RNA type mRNA
GC content 0.47
exon number 17
gene id prkcbb
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13532570 ~ 13633527 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AgctcgcgcgcgcgcgcgtgtatgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtacCGGTGCGTAAGGAGGGCACTTGGGCGGAGAGGGACGCAAAGCATCGCGCCTGAGAGTTCATCGCAGTCTGAAGCTTTGCATTACATGTACGCACTCCGCGCAACTCACTCCAGTGTACAGGCTCGCGCAAACTTTCCCCGCGTTAAGAATGGCAGAGCAGTCGAACAGCgatggagaggagaggagcGCACCCATGAGGGGCTTTGCCCGACAAGGTGCTCTGAGACAGAAGAACGTTCACGAAGTTAAGAACCACAAGTTTATCGCTCGCTTCTTCAAGCAGCCTACTTTCTGCAGCCACTGCACGGACTTTATCTGgggTTTTGGGAAACAAGGATTTCAGTGTCAAGTCTGCTGCTTTGTGGTGCACAAGCGTTGCCATGAATTCGTCACCTTCTCCTGCCCCGGAGCAGATAAGGGTCCTGCATCAGATGACCCGCGCAGTAAGCACAAGTTCAAGGTCCACACGTACTCCAGCCCCACCTTCTGTGACCACTGCGGCTCTCTGCTGTATGGACTCATCCACCAGGGCATGAGATGTGACCACTGCATGATGAACATCCATAAGCGCTGTGTGGCCAACGTGCCGAGTCTGTGTGGGACTGACCACACTGAGAGGAGGGGCCGCATCCAAATCACTGCAGAGATCAAGAACAATGTGCTCACCGTCAGCATTAAAGAGGCGAAGAACCTGGTGCCCATGGACCCTAACGGACTCTCTGACCCCTACGTCAAACTAAAACTCATCCCTGACCCCAAGAGCGAGAGCAAACAGAAGACCAAGACCATCAAGTGCTGCCTGAATCCCACGTGGAACGAGACTTTCACATTTAATCTGAAGGAGTCTGACAAGGACCGCAGGCTGTCTGTGGAGATCTGGGACTGGGACTTGACCAGCCGGAACGACTTTATGGGCTCTCTGTCTTTCGGCATCTCAGAGCTTCAGAAGCAAGGGGTGGACGGATGgttTAAGCTGCTCAGTCAGGAAGAGGGCGAGTACTTCAACGTACCTGTCCCACCTGAAGGAGAAGAAGGCAATGAGGAACTCCGGCAGAAGTTTGAGAGAGCTAAAATTGGTCCCAGCAAAACAGACGGCTCTTCCTCCAACGCCATCTCCAAATTCGACAGCAATGGCAAGCGGGACCGCATGAAACTGTCCGACTTCAATTTTCTCATGGTGTTGGGCAAGGGTAGCTTTGGAAAGGTGATGTTGGCAGAGAGAAAGGGAGGTGACGAGCTGTTTGCCATAAAGATCTTGAAGAAGGACGTGGTGATCCAGGATGATGATGTTGAATGCACTATGGTGGAGAAGAGAGTGTTGGCCTTGCCAGGAAAACCACCCTTCCTCACTCAACTGCACTCCTGCTTTCAAACCATGGACCGCCTGTATTTTGTCATGGAATACATCAGTGGTGGGGATCTCATGTATCATATCCAGCAGGTCGGCAAGTTTAAGGAACCCCACGCTGTgttTTATGCTGCAGAAATCGCCATAGGCCTGTTCTTCCTACATGTGAAGGGTATTATATACAGAGATCTAAAGTTGGATAATGTCATGTTGGACATGGAGGGTCATATCAAAATTGCTGATTTTGGCATGTGCAAGGAGAACATGCTTGATGGAGTCACCACCAAGACCTTTTGTGGGACCCCCGACTACATCGCCCCTGAGATCATCGCTTACCAGCCTTACGGAAAGTCAGTGGATTGGTGGGCTTTTGGAGTTCTGCTCTATGAGATGCTAGCTGGGCAGCCCCCATTTGAtggtgaggatgaggatgagctGTTTCAGTCCATCATGGAGCATCATGTGTCCTATCCCAAATCCATGTCCAAAGAAGCTGTGGCCATCTGCAAAGGGCTGATGACCAAACACCCAGGGAAGCGTCTGGGCTGCGGTCCTGAGGGTGAGCGGGACATCAGGGAACACGGCTTTTTCCGTTACATGGATTGGGAAAAGTTGGAGAACAAGGAAGTTCAGCCACCGTTTAAACCAAAGGCCcgaAACAGCCGAGATACTTGCAACTTTGACCGGGAGTTCACAAAAATGGCCGTCGAGCTCACACCCACCGACAAGCTGTTTATCATGAATCTGGACCAGGACGAGTTCCTGGGGTTCTCCTACACCAACCCGGAGTATGTCAATCCCGCTCAGGGTTAATCGAGCGAGCGTACCAGAGACTGCCGGTCGTGAATCTCTCTGTCtgcctgtatgtgtgtgacaTGTATGCTCAGGGTCGTGAAAGCTCACTCATATTACTGTAACAGGATTTTACCAAAGGGCTCAGGTGGACCACCTCAGTGTATAGCTGTGCGGTATTCAGACATGTTTCCAAGGGGCCAGAATTCAAGCAGTCTGTCCCACCACAAGTCAAACAAGTTTCCCTCTTCCTGGCGTTCACGCCAGAAACCCCCAGCTTCACGAGATTGCATTCAGTGTTTGGTGTTTATACGACGGTAAACGTGGCCTATGCAACAAACGAGGAACAAACACGACTAACCCCGAGTGAGCaatttgaaaaacaacaatgcagccttcaattatttatttgtggttcATTATTTTTCCCCCTGTTTGGTCTCTATTTGAGCTGAGCTAATGTTTAATTCACTGGCTTAAACCCATTATACCAAAATATTATTACCTCCCACACATGACTTGAGCTGGCGCTCCCGTGCAGCCTGTGTGAAGTGCTGAATCCCAGGCAGAAGTGTCCGCACTATTGTGACATTCAGGGAGAGggaacgagaaaaaaaaaatatgtcaagaTGGTTGCAAAGTGAAAATGTCATTATCATTCGTAACTCTGTGTTTCAGGAAGGATTCATATCACTGGGTTTGGGGAGAGCGGAGATTTGTAAAGCTACTAGTTCATATTTCAGTATCCTTGAGGAACGAGGATTAGATCAAACGCAGCCGACGCCGTCTTGCAATACAGAATTCAAATAGTACATAACTGTGTATCTATGCACCTTGTAGGAAACACAATGTGCCATTTTCCAAGGGACTTCAGCATCCCTGTGATTTCAAATGCTTAATTTGCATGATTGCAATAGTTTGTTTATCCTCTAGGCATAATACTTTTGGATGTATCTATCATTCAGCCGAAAAGACTCTGGTTTTCAATCACAGAAAAATCATGCTCGCATTTCCGAACGCTTGGTCTAGATCAGTCGTATATAGCAATGTGATTTGAGTCCGCCACCTATGTGCACTGATGACTCATAGGCtttgtgtaaataatgtaactaagcactttctgaagaaaaaagaaaacatatttcttaGCTACCTTCTCATTCGTTTAAAAGATAATGGCATACTGTTATTAAGGTTCTGCATGTTCGGATTTATTATCACTACACATTAATGGCTTGTAATTTGTTCCCTGCAtcatcttgtttttgtttttgttttttttgctttttttttagtatgtaAACATATTCATGTGTCTCAAAGATCCCTGGTCAAACCTCTAATGAAAACGACTTTGAGATTAGATGCACATAAATCGATAGCCTTCTCTCTCCTGAATAAGCGGAGCTGGATTGATCTGTTCTGCCTACTCCTGTACAGATCCTAACCTCTctagtgctgtgtgtgtgtagcggtGCTGTCTCCGTGAGGTGAATAGTTGCAGTGTTTTGATTGGGCTTAGTGTCACTAGCCTTCATTTTATACTCGCCGTGTGGCTGCCCGGTAGTGCTATCCTATAATGCTGCCCGAGACCCGTTCGCTCCGCTGAAAGTTAAGCTGCCGCGTATCGATTGGACAATTatcaaaaagagaaataaaaggcATATATCAGTTGACACTGTGGAGCGTGGGGTGAGTGCGAGGTGATTTAAAGGGAGAATTTCGCGAGCTTAAAGGCGCAGAGTGTCTGCTTAATTGCCAGCCGAACAGTTTATGACTTTGAGGTCAGCTCCAGGGATAAAGGATGCGAGGTCTCGGAAGCCACAAACACATAGATAGTGGACGAGATGCTAGGTAAACCATTAAAGTTATAActtattgatgtatttatgagagaaaatgtaatatgttcTATTTATAATACAGATATTCAATGTAAAA

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0042113 B cell activation biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0035408 histone H3-T6 phosphorylation biological_process
GO:0035162 embryonic hemopoiesis biological_process
GO:0050853 B cell receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030374 nuclear receptor coactivator activity molecular_function
GO:0042393 histone binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0050681 androgen receptor binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0035403 histone kinase activity (H3-T6 specific) molecular_function
GO:0004697 protein kinase C activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29485 lncRNA upstream 88992 13409739 ~ 13443578 (+) False G19788
TU29498 lncRNA upstream 90421 13441686 ~ 13442149 (+) True G19798
TU29482 lncRNA upstream 93244 13435894 ~ 13439326 (+) True G19788
XR_006250477.1 lncRNA upstream 120652 13408320 ~ 13411918 (+) True LOC122341620
TU29473 lncRNA upstream 168840 13362886 ~ 13363730 (+) True G19780
TU29615 lncRNA downstream 65047 13698574 ~ 13705402 (+) False rbbp6
TU29624 lncRNA downstream 154306 13787833 ~ 13792555 (+) True G19890
TU29625 lncRNA downstream 181826 13815353 ~ 13818222 (+) True G19891
XR_006250533.1 lncRNA downstream 280399 13913926 ~ 13920269 (+) True LOC122342149
TU29717 lncRNA downstream 307089 13940616 ~ 13943491 (+) True G19963
XM_043235209.1 mRNA upstream 4052 13521215 ~ 13528518 (+) True smarce1
XM_043235210.1 mRNA upstream 4052 13521215 ~ 13528518 (+) False smarce1
XM_043235211.1 mRNA upstream 4052 13521216 ~ 13528518 (+) False smarce1
XM_043235212.1 mRNA upstream 4052 13521218 ~ 13528518 (+) False smarce1
XM_043235213.1 mRNA upstream 4052 13521221 ~ 13528518 (+) False smarce1
XM_043235988.1 mRNA downstream 15767 13649294 ~ 13683496 (+) True cacng3b
XM_043235967.1 mRNA downstream 65010 13698537 ~ 13710865 (+) True rbbp6
XM_043235968.1 mRNA downstream 65010 13698537 ~ 13710865 (+) False rbbp6
XM_043233948.1 mRNA downstream 85409 13718936 ~ 13764372 (+) False LOC122339456
XM_043233946.1 mRNA downstream 104370 13737897 ~ 13764372 (+) False LOC122339456
TU29192 other upstream 544657 12835381 ~ 12987913 (+) True LOC122332158
unassigned_transcript_277 other upstream 644509 12887157 ~ 12888061 (+) False LOC122332158
XR_006250478.1 other upstream 1003767 12519837 ~ 12528803 (+) False gtpbp1
TU28786 other upstream 1018849 12511926 ~ 12513721 (+) False G19326
TU28787 other upstream 1018849 12511926 ~ 12513721 (+) False G19326
TU29613 other downstream 65047 13698574 ~ 13702353 (+) False rbbp6
unassigned_transcript_286 other downstream 280096 13913623 ~ 13913694 (+) True trnat-cgu
TU29734 other downstream 415963 14049490 ~ 14053032 (+) True G19973
TU29797 other downstream 484940 14118467 ~ 14119570 (+) True G20015
XR_006248644.1 other downstream 621963 14255490 ~ 14267791 (+) False abcc1

Expression Profile