RNA id: XM_043235212.1


Basic Information

Item Value
RNA id XM_043235212.1
length 2059
RNA type mRNA
GC content 0.50
exon number 11
gene id smarce1
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13521215 ~ 13528518 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTAGTTTATGGTCACTAGGGGGCAGAAATGTGCTAGAAAATCAGGTCAGATGCAGCTCAAAATGTGTCACATCCTGGCGGAGCAGCATTGAGGGAACAAAGGAGCTGGGGAACCAAATGATGGGGATAGCCTGATATCCTCAATCCTACAAACAAGATGTCAAAGCGGCCACCCTATGCCCCAGCCCCCACCCCAGCCCCACAACACAAATGCCCACCACCCCTGGGTTTGTGGGGTACAACCCATACAGCCATCTGGCCTACAACAACTACAGGCTGGGAGGGAACCCCGGCGGGAACAACAGGAACTCCTCAGGGATCACCGTTCCTAAGCCGCCCAAACCGCCCGACAAGCCGCTGATGCCCTACATGCGGTATAGCCGGAAGGTTTGGGACCAAGTTAAAGCCTCTAATCCTGACCTGAAGCTATGGGAGATTGGGAAGATCATCGGTGGCATGTGGAGGGACCTCACTGATGAGGAAAAACAGGACTATTTAAACGAATACGAAGCCGAAAAGATCGAGTATAATGACTCTCTGAAGGCCTACCACAACTCTCCGGCCTACCTGGCGTACGTCAACGCTAAGAACCGCGCGGAGGCTGCTCTAGAAGAAGAGAGCAGGCAGAGACAGTCGCGCCTAGACAAGGGCGAGCCCTATATGAGCATCCAACCTGCTGAGGACCCTGATGACTATGATGACGGGTTCTCCATGAAGCATATAGCGGCAGCTCGTTTCCAGAGAAACCACCGGCTCATCAGTGACATCCTGAGCGAGGTTGTGGTGCCTGATGTTCGCTCCGTGGTGACCACTGCTCGCATGCAGGTCCTCAAACGCCAAGTCCAGTCCCTCATGGTGCACCAGAGAAAGCTTGAAGCAGAGCTGCTTCAAATTGAGGACCGGCACcaggagaagaagaggaggttCCTGGAGAGCACCGACTCCTTCAATAACGAGCTAAAACGGctGTGCGGTCTGAAAGTGGAGGTGGACATGGAGAAGCTGGCAGCTGAAATGGCTGCTGCAGAGGAGGCGGCTCGCCGGAGGGCCGAGGAGAGGGAGCGGGAAGCAGCGGAGCAGGTGGAAAGAGCCGCTCAAGAAGAGCAGCAGCCTGCCGTCGGCTCTCAGGCCAATGCCAACTCTGAACAAACCTCTGCCAGCGAGGCCAAGGATGGAGAAGACAAGCCCACTCCTATGGAGACGGAGTCTCTGGCTGAAGCTTCTGAAGGATCTCAGGAGGCCGAGCAAGGCGCCCCGGCTGCAGCAGGAGATAAACCGGCCCAACCTGAGCCAGCAGAGGGCGCTACAGACGAGGGCACCAGCGATAGCACTGCTCCATCTGAGAGCAGCTCTGGACCCCCAGCAGAACCCCAGGCCTCAGACACCCCTGAAGAGCGGCTGCCCGCCCCGCCACAATAACATTCATTTACAAAAGCTCACTTCGCTCTGTGTAAAGTCATGTGTCCTCTAGGATTTGTAATCCTATGACCTGCCACGGTGAACggtgaaaatttttttttttccttctccctAAATGTTCTTACGTGAATTGTTTTGGAAGGACAGCAGAATCTTGGTTGTTCCACACACATTCAGTCAGGCACATTTACTCACATTTACTTATCCTAACCCTGATGTTAAGAGCCTTTTATGGccatttaaaaagctgttttatcaTTGTAAAGAGAGCAAATGTTgagtaaaatgtaatacatcCTGCAGTCaccaatttttattaaaaaaaaattccaaaaagcCGAAATGCAAGGTTATTTACCGTCACTTACCATGTTTTATCTATCTGTGGCATGATGGTAtaccttttgttttattctttcacAGCTTAGTTGAGTAGTCTGTGggctgtagtttttttttgttttttttttacttcaaaataaagcCATGCTAGCGCTCATGATTTTTCCATTGCAAAAGATTGACCACACAGAACAGATATCTACATGGAATGGTATTACATTAAGCCTCtggattattgtttttgtattgttgGAAGGCATTCCCTCAATAAAGTGATTTCTATgtctgttttaaacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29485 lncRNA upstream 77640 13409739 ~ 13443578 (+) False G19788
TU29498 lncRNA upstream 79069 13441686 ~ 13442149 (+) True G19798
TU29482 lncRNA upstream 81892 13435894 ~ 13439326 (+) True G19788
XR_006250477.1 lncRNA upstream 109300 13408320 ~ 13411918 (+) True LOC122341620
TU29473 lncRNA upstream 157488 13362886 ~ 13363730 (+) True G19780
TU29615 lncRNA downstream 170056 13698574 ~ 13705402 (+) False rbbp6
TU29624 lncRNA downstream 259315 13787833 ~ 13792555 (+) True G19890
TU29625 lncRNA downstream 286835 13815353 ~ 13818222 (+) True G19891
XR_006250533.1 lncRNA downstream 385408 13913926 ~ 13920269 (+) True LOC122342149
TU29717 lncRNA downstream 412098 13940616 ~ 13943491 (+) True G19963
XM_043229520.1 mRNA upstream 829 13501604 ~ 13520389 (+) True ca10b
XM_043235269.1 mRNA upstream 19799 13473508 ~ 13501419 (+) True itga3a
XM_043235267.1 mRNA upstream 19799 13473508 ~ 13501419 (+) False itga3a
XM_043235288.1 mRNA upstream 53067 13462052 ~ 13468151 (+) True cdk5r1a
XM_043235110.1 mRNA upstream 126255 13391973 ~ 13394963 (+) False dusp3b
XM_043233748.1 mRNA downstream 4052 13532570 ~ 13633527 (+) False prkcbb
XM_043233747.1 mRNA downstream 4058 13532576 ~ 13625258 (+) True prkcbb
XM_043235988.1 mRNA downstream 120776 13649294 ~ 13683496 (+) True cacng3b
XM_043235967.1 mRNA downstream 170019 13698537 ~ 13710865 (+) True rbbp6
XM_043235968.1 mRNA downstream 170019 13698537 ~ 13710865 (+) False rbbp6
TU29192 other upstream 533305 12835381 ~ 12987913 (+) True LOC122332158
unassigned_transcript_277 other upstream 633157 12887157 ~ 12888061 (+) False LOC122332158
XR_006250478.1 other upstream 992415 12519837 ~ 12528803 (+) False gtpbp1
TU28786 other upstream 1007497 12511926 ~ 12513721 (+) False G19326
TU28787 other upstream 1007497 12511926 ~ 12513721 (+) False G19326
TU29613 other downstream 170056 13698574 ~ 13702353 (+) False rbbp6
unassigned_transcript_286 other downstream 385105 13913623 ~ 13913694 (+) True trnat-cgu
TU29734 other downstream 520972 14049490 ~ 14053032 (+) True G19973
TU29797 other downstream 589949 14118467 ~ 14119570 (+) True G20015
XR_006248644.1 other downstream 726972 14255490 ~ 14267791 (+) False abcc1

Expression Profile