RNA id: TU31441


Basic Information

Item Value
RNA id TU31441
length 222
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G21151
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19258917 ~ 19287649 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttttttttttttttttttttttttttttTTGTCTTCCAATGTTTATTTGTTGGcgattttacatgttttagaaaaagaaCCCAAGGATTTTTCCTCCTGTGTGTTTTCGTCTGGCCTCCTCGTGGTCCATGATGCCAGCTGAGGTCGTCAAAACAATGAATCTGCAGAGAATACAGAGACAAAAAGACATGACCAGGCTGTTCAAGATGCTGCTGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31498 lncRNA upstream 404374 18854109 ~ 18854543 (+) True G21188
TU31495 lncRNA upstream 429664 18828686 ~ 18829253 (+) False LOC122341799
TU31450 lncRNA upstream 514332 18576013 ~ 18744585 (+) True LOC122341661
TU31489 lncRNA upstream 555234 18702584 ~ 18703683 (+) True G21180
XR_006248109.1 lncRNA upstream 604202 18652361 ~ 18654715 (+) True LOC122331012
TU31539 lncRNA downstream 17203 19304852 ~ 19305058 (+) True G21215
TU31570 lncRNA downstream 150358 19438007 ~ 19440646 (+) True G21239
XR_006250479.1 lncRNA downstream 167777 19455426 ~ 19459635 (+) True LOC122341657
TU31624 lncRNA downstream 183350 19470999 ~ 19472687 (+) True G21269
TU31590 lncRNA downstream 195852 19483501 ~ 19484384 (+) True G21246
XM_043234685.1 mRNA upstream 130269 19122323 ~ 19128648 (+) True LOC122341328
XM_043225694.1 mRNA upstream 299424 18956030 ~ 18959493 (+) True LOC122329464
XM_043235430.1 mRNA upstream 417157 18828665 ~ 18841760 (+) True LOC122341799
XM_043235844.1 mRNA upstream 539195 18714925 ~ 18719722 (+) True LOC122342072
XM_043233829.1 mRNA upstream 547282 18704513 ~ 18711635 (+) True retreg3
XM_043235124.1 mRNA downstream 5152 19292801 ~ 19297531 (+) True c3h17orf75
XM_043235126.1 mRNA downstream 5152 19292801 ~ 19297531 (+) False c3h17orf75
XM_043233874.1 mRNA downstream 89326 19376975 ~ 19380629 (+) True ppp4ca
XM_043233870.1 mRNA downstream 97373 19385022 ~ 19393198 (+) True mapk3
XM_043235804.1 mRNA downstream 107082 19394731 ~ 19399272 (+) True gdpd3a
TU31519 other upstream 265683 18991458 ~ 18993234 (+) True G21202
TU31520 other upstream 265720 18991458 ~ 18993197 (+) False G21202
TU31517 other upstream 265758 18991458 ~ 18993159 (+) False G21202
TU31403 other upstream 382790 18869266 ~ 18876127 (+) True G21125
TU31404 other upstream 385688 18869266 ~ 18873229 (+) False G21125
TU31536 other downstream 3796 19291445 ~ 19292341 (+) True G21213
TU31603 other downstream 112183 19399832 ~ 19403176 (+) False ypel3
TU31597 other downstream 112222 19399871 ~ 19403176 (+) False ypel3
TU31600 other downstream 112222 19399871 ~ 19403176 (+) False ypel3
TU32077 other downstream 776841 20064490 ~ 20068001 (+) False LOC122341338

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU19645 True 201 lncRNA 0.28 1 NC_047595.1 30293607 ~ 30293807 (+)
mexican tetra (Astyanax mexicanus) TU19645 True 2986 lncRNA 0.49 2 NC_035898.1 30260677 ~ 30265961 (+)