RNA id: XM_043235126.1


Basic Information

Item Value
RNA id XM_043235126.1
length 2129
RNA type mRNA
GC content 0.44
exon number 9
gene id c3h17orf75
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19292801 ~ 19297531 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCAGACGGCGCATGCGCAGCAGCGTCGCTGTCACTACTATGACTTTAGTTAAATGTCACGTAGCATTTAAAtcgatttttaaacaaaatacttaCACGCCTTTAATTCAGTAACGTCTTTGGCACTTACATTTGTTAGTTAAAGTAACAGCACGCCGTCCGTAGCAGATATCAGAGTCGCTCGTCTTCTTTTAGCTCAGCAGAGACATGTTTACATCCCAGACCTCTTCCTTTCAGGAGTCCATAGACGTGGATGAAAGGGACGCAGACTTCGACAACGAAGAAATCGCCGGATACAGCCAGAAAATACAACAGATTAACAGCTATTATGCCATATACTACTACCAGAACACAAGTCTCACGCTGCTGGACGCCAGCTTGCCACCCGAGGCCGAGCCAGAGCTACGCAGCTACATCTCCCGCAGGCTGAGCAAGGGCGCTTTGCTAGGGGGTATGGGTAACATTGCCACCGTGGAGCTAAGCATCCCTGAGCAAGCGGTGGGCTGTTACTGCTGtctgctggagcaggagaaATCTCCAGAACAGCCTGAGGCCGATGGCAACGGCTGGGTGGTGTGTCTTCTCGGAGGATCAGAGAAGGGCCTGAATCTGTTTAGAATTGAGCTGGACAAGTACGTCCAGGGTCTGCAGGGCTGTTTGACTCCAGAGATGCAAAATTTGGAGACCGAAGTCAGGCCCTACCTGATCCGCTGGTATGAGGAGTCAGTTCTGCACATTCACAGAGTGGTTCAGCTGCTGCAGGCCAACGTCGGGTACCTTCTGCATGCTGCTTTGAGTCACAAACTTGTCGAGGTCACAGGGGCAGATGAGAAGACAAAAGCAGATGTAGCAAGATTTATCAAAGCAGCAAGCCTGCAGGGTATAGTTCAGGAAGACACCACTACAGCCTCTCTCTGTAAGGCCCTTTCAGAGGACACTCACACCAGTCTGATCATCGACTGCTCCTCCAGCCCGCCTACACTCTCCAATGAAGTCAGCAACCGGTTCTGCGACGACTGGATCCAGGCCTTCCTCAATGCTGCTGAGCGCTTTAACCCTTTCCTTCTCCGACAAATCCTGGAGAACTTTAAACTTAAGGCCATCCAGGACATGAACAACCTGAAGCGCTTCATCCGTCAGGCAGAAATGAGCCACTACGCTCTGTTCCGCTGCTGTCTGTTCCTGCAGAGCTGTGGAAACGGAGACGTGCTGCTGCAGAACGCACGGGCCGAGCACAGCAGCCTTCCTGAGGCCTGTGGCATCATAAACGTGCTGGAGGAGTTCCTCGGGGAGCACACTCAGGGCACGCTGTACTGACACCAGAGCTACTGCACATACACTCACCTGTCTGAGAGCACAGAAGTCCTGTTTAACACCCATTATCATAGCAGTGTGGTTTGCATTTTAAGCAACTTCAGCACATTTGAATTGAAACACTAAGTGTAGTCTATCGATGCTGTGAAATGCTCCTGTATGTTGACTTGTGcataaaaatgatgaattaaatatatCCTATATAATGGACCGATGAAGGTGCAatcaaactttatttaaatactttttctcAATTATGTGCAGATATTAATACAGTACTGTTTATATGTGACAACTGATTTTAGGATGTTCATTGTGTAACAGTCAATGTTTTGAAGATGTCTTGTAGATTTACAGAAATAGCAACTGAATTAGGAAGCTAGTCATATAATTAGGAAGCTATCCATTATCTGATCTGCCATACTATGTTTTATTGGTatgttataattgttttttttttttaaagtgctgaTGTATGTTCTTGTTTGCTATCTCTGAATTTTTCTTACCAAAGAAACAAAACTTCTGATAATCAAACTTGGTTGTAAATGTAACgtttaaaaagaacagaattgtgagaaacaTTACTTAAACATCTTATATATATTGATCCAGTTGTAAATGGTGATATGTATAATTATCATAATGTATGGTTTATCTTAGATTTGACATGACTGTACTGTGAGTAATTTGTTCCaggaacatttcatttttgtgaatttgtaagaatgaaagaaaatctcAGCATTCACTCTTAATTTAACCTTGATTCTTGAATTCATGCaagaattaaaataacacatgaCACAGGcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31441 lncRNA upstream 5152 19258917 ~ 19287649 (+) True G21151
TU31498 lncRNA upstream 438258 18854109 ~ 18854543 (+) True G21188
TU31495 lncRNA upstream 463548 18828686 ~ 18829253 (+) False LOC122341799
TU31489 lncRNA upstream 589118 18702584 ~ 18703683 (+) True G21180
XR_006248109.1 lncRNA upstream 638086 18652361 ~ 18654715 (+) True LOC122331012
TU31539 lncRNA downstream 7321 19304852 ~ 19305058 (+) True G21215
TU31570 lncRNA downstream 140476 19438007 ~ 19440646 (+) True G21239
XR_006250479.1 lncRNA downstream 157895 19455426 ~ 19459635 (+) True LOC122341657
TU31624 lncRNA downstream 173468 19470999 ~ 19472687 (+) True G21269
TU31590 lncRNA downstream 185970 19483501 ~ 19484384 (+) True G21246
XM_043235770.1 mRNA upstream 30916 19203479 ~ 19261885 (+) True xylt1
XM_043234685.1 mRNA upstream 164153 19122323 ~ 19128648 (+) True LOC122341328
XM_043225694.1 mRNA upstream 333308 18956030 ~ 18959493 (+) True LOC122329464
XM_043235430.1 mRNA upstream 451041 18828665 ~ 18841760 (+) True LOC122341799
XM_043235844.1 mRNA upstream 573079 18714925 ~ 18719722 (+) True LOC122342072
XM_043233874.1 mRNA downstream 79444 19376975 ~ 19380629 (+) True ppp4ca
XM_043233870.1 mRNA downstream 87491 19385022 ~ 19393198 (+) True mapk3
XM_043235804.1 mRNA downstream 97200 19394731 ~ 19399272 (+) True gdpd3a
XM_043235805.1 mRNA downstream 101877 19399408 ~ 19403176 (+) True ypel3
XM_043235806.1 mRNA downstream 101877 19399408 ~ 19403176 (+) False ypel3
TU31536 other upstream 460 19291445 ~ 19292341 (+) True G21213
TU31519 other upstream 299567 18991458 ~ 18993234 (+) True G21202
TU31520 other upstream 299604 18991458 ~ 18993197 (+) False G21202
TU31517 other upstream 299642 18991458 ~ 18993159 (+) False G21202
TU31405 other upstream 419744 18869266 ~ 18873057 (+) False G21125
TU31603 other downstream 102301 19399832 ~ 19403176 (+) False ypel3
TU31597 other downstream 102340 19399871 ~ 19403176 (+) False ypel3
TU31600 other downstream 102340 19399871 ~ 19403176 (+) False ypel3
TU32077 other downstream 766959 20064490 ~ 20068001 (+) False LOC122341338
TU32078 other downstream 768599 20066130 ~ 20068001 (+) False LOC122341338

Expression Profile