RNA id: XM_043227387.1


Basic Information

Item Value
RNA id XM_043227387.1
length 8080
RNA type mRNA
GC content 0.40
exon number 35
gene id LOC122330435
representative False

Chromosome Information

Item Value
chromosome id NC_056723.1
NCBI id CM032092.1
chromosome length 17260642
location 15053638 ~ 15091698 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGTCCCCTACAAAGTGGTCAAATACAGCAGTCAAAGTAATGTCTTGTAAGACCTGCAGCGTGCAGCTCATCCAATCATCTTTTATAAATAACGCTTTCTGCACCGAATAGTCCAAAGGAGTATTTATCAGGCGTATGAGCAAAATAGTGGACATCACAACTTCCTGGGGGCGGAATGCGCGCTTTCTTTCCGTCGAAGTCGCGAAGCGTGGAGCGAAGCGCTGGGTTTCCGTTCAGGGACAGCGGCCCATCAGCTCCACCTTCTGCGAGGGTTCACACCTCTCACAGCCTCACAGCGAGAGTTCACGCAGAAGTTCACCGCGGAGAGACCTCGCTGGAAGCTTGCGTGAAGATGGTCTGAAGATCCGCGACGGAAGATGGCTGTTTCTGTGGGACCAGCGCTTGATCGCCCTCATTCTTCGGGGGTTGAATGCAGAGGGTAACGTTAGTTTGACTGGAGAGCCAGATGTGATCAGAAATCTAACAGTGAACAACATCACAACATCATCTGTGTTTCTGAAATGGACTGAACCAATCGGAAATAGATCTTTCTTTAAAATTCAGTGGGctggtaataaaataaatgaaactagTAACACTTCCCATCTCATCCCTGGTCTGACTGCTGGAGTCAGTTACTCATTCTGCATCAGTGCTGTGGCAGCAGACAATTCAACAGAAGGAGAAACTCTCTGCATCTCACAATACACCAAGCCAGATGTGATCAGAAATCTAACAGTGAACAACATCACAACATCATCTGTGTTTCTGACATGGACTGAACCTGTTGGATATAGATCCGTGTTTAAAATTAACTGGACTgatgataaaacaaacagaaacaaaacagaaactaCTAACACTTCTCTCATCACTGGTCTGACTGCTGGAGTCAGTTACTCATTCTGCATCAGTGCTGTGGCAGCAGACAATTCAACAGAAGGAGAAACTGTCTGCATCTCACAATACACCAAGCCAGATGTGATCAGAAATCTAACAGTGAACAACATCACAACATCATCTGTGTTTCTGACATGGGATGAACCTCATGAAAAGAGGTCTTTCTTTAAAGTTCAATGGACTGATGGTAACAGAAATGAAACTACTAACACTTCCCATCTCATCCCTGGTCTGACTGCTGGAGTCAGTTACTTATTCTGTATCAGTGCTGTGGCAGCAGACAATTCAACAGAAGGAGAAACTGTCTGCATCTCACAATACACCAagCCAGATGTGATCAGAAGCCTAACAGTGAACAACATCACAACATCATCTGTGTCTCTGACATGGGATGAACCTCATGGAAAGAGGTCTTTCTTTAAAGTTCAGTGGGCTGATGGTACACCAAATGCAACTATTGACAATTTCTATAACATCACTGGTCTGACTGCTGGAGTCAGTTACTCATTCTGCATCAGTGCTGTGGCAGCAGACAATTCAACAGAAGGAGAAACTGTCTGCATCTCACAATACACCAAGCCAGATGTGATCAGGAATCTCAGAGTGTCTAATATCACAGCATCATCTGTGTCTCTGACATGGACTGAACCTGAAGGAAAGAGGTCTTTCTTTAAAGTTCAATGGACTGATAGAAACAGAAGTGAAACTACTAACACTTCCCATCTCATCCCTGGTCTGACTGCTGGAGTCAGTTACTCATTCTGTATCAGTGCTGTGGCAGCAGACAATTCAACAGAAGGAGAAACTGTCTGCATCTCACAATACACCAAGCCAGATGTGATCAGGAATCTAACAGTGAACAACATCACAACATCATCTGTGTTTCTGACATGGGATGAACCAGCTGGAAATAGATCTTTCTTTAAAATTCAATGGGCTGatgataaaagaaatgaaactaCTAACACTTCTCTCATCCCTGGTCTGACTGCTGGAGTCAGTTACTCATTCTGCATCAGTGCTGTGGCAGCAGACAATTCAACAGAAGGAGAAACTCTCTGCATCTCACAATACACCAAGCCAGATGTGATTGGATATCCAACAGCGAATGACATCACAACATCATCTGTATTTCTGACATGGAATGAACCGGCTGGAAATAGATCTTACTTTAAACTTAAATGGACGGAtgggcagacagacagaaatgcaacaaaaattaGCAACACTTCCTATCACATCACTGATCTGACTGCTGGGGTCAATTACACGTTCTGCATCACCGCTGTTACTGAGGATGACTCCGAAGGGGAAACTGTCTGCATCTCACAATACACCAAGCCAGAAGTAATCACAAATCTCACAGTGTCTAAAATCGCAACATCATCTGTGTCTCTGACATGGGCTGAACCAATCGGAAATAGAGCTTTCTTTAAAATTCAATGGGCTGGTGATAAAAGAACTGAAACTAGTAACACTTCCCATCTCATCCCTGGTCTGACTGCTGGAGTCAGTTACTCATTCTGCATCAGTGCTGTGGCAGCAGACAGTTCAACAGAAGGAGAAACTGTCTGCATCTCACAATACACCAAGCCAGATGTGATCAGAAATCTGACTGTGAGCAACATCACAACATCATCTGTGTTTCTGACATGGGATGAACCAGCTGGCAATAGATCTTTCTTTAAAATTCAATGGGCTGGtgataaaagaaatgaaactgCTAGCACTTCCCATCTCATCCCTGGTCTGACTGCTGGAGTCAATTACTCATTCTGCATCAGTGCTGTGGCAGCAGACAATTCAACAGAAGGAGAAACTGTCTGCATCTCACAATACACCAAGCCAGATGTGATCAGAAATCTGACTGTGAGCAACATCACAACATCATCTGTGTTTCTGAAATGGGCTGAACCAATCGGAAATAGATCTTTCTTTAAAATTCAGTGGACTggtaataaaagaaatgaaactaCTAACACTTCTCTCATCACTGGTCTGACTGCTGGAGTCAGTTACTCATTCTGCATCAGTGCTGTGGCAGCAGACAATTCAACAGAAGGAGAAACTGTCTGCATCTCACATTATACCAAGCCAGATGTGATCAGGAATCTAACAGTGAACAACATCACAACATCATCTGTGTTTCTGAAATGGGCTGAACCAATCGGAAATAGATCTTTCTTTAAAATTCAATGGGCTGgtgatcaaacaaacaaattttcAAGAACTACTAACATTTCTAAAACTTCTCATCTCATCCCTGGTCTGACTGCTGGAGTCAGTTACTCATTCTGCATCAGTGCTGTGGCAGCAGACAATTCAACAGAAGGAGAAACTCTCTGCATCTCACAATACACCAAGCCAGATGTGATCAGGAATCTAACAGTGAACAACATCACAACATCATCTGTGTTTCTGACATGGGATGAACCAATTGGATATAGATCCGTCTTTAAAATTAACTGGACTgatgataaaacaaacagaaacaaaacagaaactaGTAACAGTTCTCTCATCACTGATCTGACTGCTGGAGTCAGTTACTCATTCTGCATCAGTGCTGTGGCAGCAGACAATTCAACAGAAGGAGAAACTGTCTGCATCTCACAATACACCAAGCCAGATGTGATCAGAAATTTAACTGTGGCCAACATCACAACATCGTCTGTGTTTCTGACATGGGATGAACCTCACGGacagagatttttatttaaacttcagTGGACTGACGagcagaaaaatataaatgcaacagAACTGAATAACACTTCCTATCACATCACTGATCTGACTGCTGGAGTCAAGTACACGTTCTGCATCATTGCTGTTGCTGATGATTTGTCAGAAGGAGACACTTTATGCATCTCACAATACACCAAGCCAGATGTGATCAGGAATCTAACAGTGAACAACATCACAACATCATCTGTGTTTCTGACATGGGATGAACCAGTTGGAAATAGATCTTTCTTTAAAATTCAATGGGCTGATGATCAAACAAGTAAAAATTCAACGACTACTAACACTTCCCATCTCATCACTGATCTGACTGCTGGAGTCAGTTACACATTTATCATCACAGCTGTAGCAGCAGACAATTCAACAGAAGGAGAATCTGTACTTACCTCAAAATATACTAAGCCAGATATGATCAGGAATCTCACAGTGTCTGAAATCACAACATCATCTGTGTCTCTAAAATGGGCCGAACCAGCGGGAAATAGAGCTTTCTTTAAAATCCAATGGGACGGTTATCAAACAAGAAATAATTCAACAACTACTAACACTTCCCATCTCATCCCTGGTCTGACTGCTGGAGTCAGTTACTCATTCTGCATCAGTGCTGTGGCAGCAGACAGTTCAACAGAAGGAGAAACTGTCTGCATCTCACAATACACCAAGCCAGATGTGATCAGAAATCTAACAGTGAGCAACATCACAACATCATCTGTGTTTCTGACATGGGCTGAACCAATCGGAAATAGATCTTTCTTTAAAATTCAATGGGCTGATGATCAAACAAGTAAAAATTCAACGACTCGTAACACTTCCCATCTCATCACTGATCTGACTGCTGGAGTTAGTTACACATTTATCATCACAGCTGTAGCAGCAGACAATTCAACAGAAGGAGAATCTGTACTTACCTCAAAATATACTAAGCCTGACGTCATCATGAACCTCACAGCTGTTAATATTACAACATCCTCTGTCTTACTAAACTGGAGTAAACCAAATGGTCAAAGCTCCCATTATCGTGTAGAATGTGAAGATAAGAATGTGACTGTTGAAGACACCtccatcaaaataaatggtCTGATTCCTGGAGCACAGTACAAGTTCAAAGTGTTTGCGGTTGCAGCTGATAATGTGACTGAGGGGAGAGCCAATCAGATTTCACTGTATATCAAGCCAGATGCGATCAGAAATCTAATtgtgaaaaacatcacaacatcaTCTGTGTTTCTGACATGGGATGAACCAGTTGGATATAGATCCGTCTTTAAAATTGACTGGACtgatgataaaataaacagaaacaaaacagaaactaCTAACACTTCTCTCATCACTGATCTGACTGCTGGAGTCAGTTACACATTCTGCATCATTGCTGTGGCAGCAGACAATTCAACAGAAGGAGAAACTGTCTGCAAATCTCTACATATCAAGCCAGAGGTCATCAGGAATCTCATAGTGGACAACATCACAACATCATCCATGTTTCTGAAATGGGATGACCCACCTGGAaatagagatttttttaaactcagTTGGACTGACgagaaaacacttaaaataaccaaaaacacaTGGTATACCATCACTGGTCTGACTGCTGGAGTCAGTTACTCATTCTGCATCAGTGCTGTGGCAGCAGACAATTCAACAGAAGGAGAAACTTTCTGCAAATTTCAATTTACAAAGCCAGATGTGATCAGGAACCTCGCAGTGTCTGAAATCACATCATCATCTGTGTTTCTGACATGGGCTGAACCAATCGGAAATAGATCTTTCTTTAAAATTCAATGGACTGATGATCAAACAAGTAAAAATTCAACGACTACTAACACTTCCAATCTCATCACTGATCTGACTGCTGGAGTCAGTTACACATTTATCATCACAGCTGTAGCAGCAGACAATTCAACAGAAGGAGAATCTGTACTTACCTCAAAATATACTAAGCCTGACGTCATCATGAACCTCACAGCTGTTAATATTACAACATCCTCTGTCTTACTAAACTGGAGTAAACCAAATGGTCAAAGCTCCCATTTTCGCATAGAATATGAAGATAAGAATGTGACTGTTGAAGACACCtccatcaaaataaatggtCTGATTCCTGGAGCACAGTACACATTCAAAGGGATTGCGGTTGCAGCTGATCATGTGACTGAGGGGAGAGCCAATCAGATTTCCCTGTATACCAATCCAGATGTGATCAGGAATTTCACAGTGTCTGAAATCACAACATCGTCTGTGTTTCTGACATGGAATGAACCAGCTGGAAATAGAGATGCTTTTAGAATTAAATGGAGTGAGAAAAGGACagatataataattaatgacacTTCCTATCGCATCACTGGTCTGACTGCTGGAGTCGGTTACACATTCTGCATCACTTCTCTAGCAGCAGATAAATCAACAGAAGGAGAAACTGTCTGCATATCTCAATCTACTAATTCTGTCATTCCAATGATTGTCGGCGTAGTTTTGGCAGTGATCTGTTTTCTCCTCCTCATCGCCCTCATTTTCTTCTTCTATTTAAGAAGACAAACCAACAAACAACCTCCCGACATCCCTGTGCACACCATTAGtaataaaatTAATATTGCTTTGAGAATAGAAGACTATGAAGAGTACTTTAAGCGGAAAAATGCAGATTCCAACTGTGGTTTTGCTGAAGAGTATGAGGAGTTGAAGACTGTTGGAACAGCACAGTCAAAGAACACTGCCCTGGCTATTGAAAACAAGCCGAAGAACCGTTATAGCAATGTGCTACCTTATGATGCTTCAAGGGTGAAGTTATCAATGTGTGGAAGTCCGTTTGATGACTACATCAATGCCAACTACATCCCAggtTACAATTCAAGAAAAGAGTTTATAGCAGCTCAGGGTCCTCTGCCCGTCACAGTGAATGAATTCTGGAGAATGGTCTGGGAGAAGAACGTCCACACCATAGTGATGCTGACCAGATGCAACGAAATGGGGCGAGTGAAATGTGAGAAGTACTGGCCATCTGGGACTAATCATTATCAAAATAACTCTGTGACGACCACCTCAGAGATAGAACTGGAGAGTTGGACCATAAGAGATTTCACactcaaaaatGTAAAAACAGCAGAAACTCGTTACATACGTCAGTTCCACTTCACGGCGTGGCCAGATCATGGAGTTCCACAGACCACTGAAGTCCTCATTGACTTCAGACACCTGGTGAGAGAACACATGGACCAGTACTCACGCCACTCTCCTGCTGTGGTACATTGCAGTGCCGGTGTGGGAAGAACTGGGACCTTCATTGCCATTGATCACCTGATCTTCCAGATTGAAAGAGACAGTATGGTGGACATCTATGGAATTGTTAATGATATGCGCATGCACAGGCCTCTCATGGTGCAGACTGAGGAGCAGTATGTTTACCTCCACCAGTGTGCATATGACATAATTCGATCAAGAACCGGAACCAATGTGGACTTAATTTACCAGAACGTAGAAGCACTCAGTATCTatcataatgtaaaataataaaaatagtaaaattatgTGGCCTCAAGATGGCCCCTGTCTAAAATCTGAAACTGCAGGAATTTATATAGCATATGTTAGGTctcatgtatatgtatatatgtccTGGATGTAATTTACTTCTTGCACAGTACTcaaaattttagtaatttttattttacactgatTACACTGGAAAAATGCAACCATTTTCTatgataataatttaaagtaaacaTCAAGCAATtgtatttaagatatttcaagAGATCTTATTTTTATACTGCAAAATGTCTGAAAGAGATATTCGTATAATTTgacataatatatttactgtaatatcTAATCTGTACATTTTAGTACTGGCACgacaaatatattatacattatttaaacatttacagcagaaacatttttttctttttttaacacactAGAAGGCACTCCCAACCTATCAGTGTGTGTTagtgataataaaatatgtatgttatGGTACagttttgctattattattatgttgtaaaTTTTGCAGTGTGCATGAAGCTCAATCTGCTGTGCTGGATATGAGTACTCTCTTGGGATTTGTAatttatgttgcattttatttgttttcaatgcgctgtttaagttatttttactgtttatgcCTTTTTATGACCAATACTTGGAATACTTTTTACTTGTATTTGAACAATAGTGCACTAGCATCACTTTCACACTGGTAGCTTCTGTAGCTTGTTTGAACTTGTGtgtatgaataatatttattaagcttcttttgattattaaaattttttaaaaatgtattattaaggaagtttttttactgtacctCTTTTGGTTTTATCAAATGGTTATGCATTTTATTGGGAAGACTCTGACACTTGCTGGAAACAATGAACACATGATGAataccaaataaatacattttaaaacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251448 lncRNA downstream 10562 15042339 ~ 15043076 (-) False LOC122330438
TU251429 lncRNA downstream 130355 14918178 ~ 14923283 (-) True G169783
TU251415 lncRNA downstream 148169 14905237 ~ 14905469 (-) True G169781
TU251178 lncRNA downstream 189597 14860685 ~ 14864041 (-) True G169650
TU251177 lncRNA downstream 193856 14859304 ~ 14859782 (-) True G169649
TU251472 lncRNA upstream 44608 15136299 ~ 15456202 (-) True G169804
TU251473 lncRNA upstream 44608 15136299 ~ 15456159 (-) False G169804
TU251495 lncRNA upstream 157264 15248955 ~ 15583635 (-) True G169808
TU251497 lncRNA upstream 157264 15248955 ~ 15583635 (-) False G169808
TU251487 lncRNA upstream 159372 15251063 ~ 15257995 (-) False G169808
XM_043227445.1 mRNA downstream 714 15029101 ~ 15052924 (-) False LOC122330438
XM_043227465.1 mRNA upstream 146866 15238557 ~ 15239573 (-) True LOC122330446
XM_043228867.1 mRNA upstream 172695 15264386 ~ 15278628 (-) True LOC122331302
XM_043227467.1 mRNA upstream 255645 15347336 ~ 15351300 (-) True LOC122330448
XM_043227463.1 mRNA upstream 262451 15354142 ~ 15382723 (-) True LOC122330444
XM_043227651.1 mRNA upstream 406626 15498317 ~ 15501750 (-) True kcnj11
TU251447 other downstream 12714 15039447 ~ 15040924 (-) False LOC122330438
TU251159 other downstream 298811 14754174 ~ 14754827 (-) True G169631
TU251150 other downstream 365049 14687446 ~ 14688589 (-) True G169622
TU251005 other downstream 965713 14083715 ~ 14087925 (-) False LOC122331294
TU251485 other upstream 158405 15250096 ~ 15572960 (-) False G169808
TU251486 other upstream 158405 15250096 ~ 15257995 (-) False G169808
TU251500 other upstream 158405 15250096 ~ 15583635 (-) False G169808
XR_006248130.1 other upstream 411295 15502986 ~ 15550803 (-) False LOC122331105
TU251550 other upstream 502593 15594284 ~ 15602848 (-) False ush1c

Expression Profile