RNA id: XM_043229089.1


Basic Information

Item Value
RNA id XM_043229089.1
length 3902
RNA type mRNA
GC content 0.38
exon number 16
gene id LOC122331563
representative False

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 3122302 ~ 3396823 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acaacacaggttgcatcaaagcacaaaTTCCTACAACATCTTGTAAAAGTGGACAGACATTTTACTTTCCTGGAATTAAAATCGCAAGATCAGTCAGTTTCTGGGTAATGAAAACAGGGACAGACCTTGTGAAATTAACCTAGAAAGTGAGAAACTCGGTGGCCACGCTGTACAAAACTGGTGTTTTTTGAGGATGCTGCTATTGTTGATTTGTGACAAAATTGAATCCCATGTTACAAATGAAGTTTGGCAACTAATTTTACTATTAAGGGAAATCGTTGTACTTTTTTGTTCACCAGCCATTTCCAGCAGTCAGATGGGGTATTTGAGAGTTTTGATTGATGAGTATCTACATTTTAGAAGACACATTTTTCCTGCCCACTGTCTCAGACCTAAACATCAATAGCCACTACCCTGACCTCATTATTCATTTCGGTCCACTCATTCGCTTATGGACGTTTGAGAGCAAGCATGTTCATTTCAAACAGTGtgtaagaaaattaaataactttaaaaatctTTGCTTTACTCTTGCAGAAAGACATCAGCTTCTCCAGGCATTTCTTTATGCTGGTGAGTTCTTTCCTCCCACTATTGTAGCAGACAAGGCAACAGAGTTTGTAGTAAGTGACTACAACGATGTCATTAGGGAAGCTGTAGCTGGATATGATTTTCAGCCTGAAAACACTACGGTTGCTCATGAGGCAACTGTTAAAGGaacaacatacaaaatatgttGTTATTCAGGAAACTGATGAAGGCTTTATTGTGGGAAGGATTGTGATGACTGTCATACAGAATTCTTCAGTGCGAGCTGTGGCGAGAATGTTTGATGTCTGTCAGCGTAGTGTCCAGAGCATGGAGGCGCTACCAGGAGACAGTACATCGGGGAGGAGGTTGAAAGAGGACAGCAACCCAGCAGCAGGTCTACAAGGAGGAACACTGCCAGAGCCCTGCAAAATGACCTCCAGCAGGCCACAAATGTGCATGTGTCAGCTCAAACGGACTCCAGGAGGGTGGCGTGAGGGCCCAACGTCCACAGGCGGGGGTTGTGCTTACAGCCCAACACCGTGCAGGACGTTTGGCACTTGCCAGAGAACACCAAGATTAGCAAATTGGCCACTGGCGCAACAGCACGTGAAATTGATCGTCAATAAGTGTCACCTCCTAAGTGAGCAGTTTGATTTCACCAAAGTGTGACTGACTTGGAGTTAAGTTGTGTTGTTTAAGCGTtccctttatttttttgagcagtgtaCGTGAAATATGACACGTCTGCATGTTCACAAAGCAAAGATCTCACTCTAGGCTGGCTGGCACATCTTTTTACCCTTAGGAGAACATCCGTCTTTATGTGCCtcgtattatattatatatatatttttttgtattctacTTCTTGTATCCAGAAAGGGCTGTTGTTTGATAAAGacttttgttgatttattttactcatatattgtttaggttttttttcctttgactTTTTTTGGCAGAACAAACAATATAATGTTAAATGGAAACAAAGAAGGAATAAAACAATAAGTTGATCCACAAATCTAAAATGTAGGGTATACAGTGTAACCAAACCTCAAAAAGCAGGTTTTGTAAGTGTTTAGACTAAACTTCTTACCCCAGGAAggaatctttcttttttttaatagcatcaGATTTCTGCCGTTGTTTTAGAAGAGAGCTGCTGTGTTTCAGAGCTTTTATTATCttaaaaaatgaacagtaaCGTTTGTGCCCTGTCTTATTTATATTCTGAAAGCTCACTTTCACTTTTGTTATCCCTCCCTCTAAAATGGGTGGTTCTTTTAAAACTGTGAAGTAGACAGCCTTAACTAATGTTCATTAGAACACGAAGCACCTCAGGCTTTGTTGATATTGTTCGGTTCAATACATCAGGTtccaaatgaacattttcatttgagatttttttctgctctgttAGTGAAGATAACATGGGTTCGTTTATTAGcaaGTGTCTCGGTGGACATAATGTGCATCAGGAGGACACGTCCAGAACTGCTTTACAACAcaaGAGTCACGATCGATATAATGTGCATCAGGAGGACACGTCCAAAGCTGCTTTACAACAtaaaCATCAAAACAGAGAGGAGCTGAACAAAACAAGtgcATATCAGTACAAAGAGGAGCTGGAAAAATGCAAagagcagctgaaaaaaaaaagAGATGAACTCGAACAGTACAAGAATTCCCAGCATGAACTCCAAGCACGtATACGTCAATACGAAGGGGAGCTTCAAAAAACAAGAGATGAACTCGAACAGTACAAGAATTCCCAGCATGAACTCCAAGCACGAGATCAGCTCAAAGGatgcaaaaaattaattgagGATGAATTACAAGAAAGACATGAACTTGAACAATGCAAGAGGGATTTAGAGAACTTACAAGCAAGTGAATATCAATGTAAAGAGGAGCTGAAACAAACAAGACAGGAACTTGATCAATGCAAGAAGGATTTAGAGCGCTTCCAAGCAAGgATGGCTTTTGAGGCATCTGTCGACATGGGAAGCAGCGGAGCTTCATGTGAGGACCTTAATAATCCTTGCAGAGAATCAGAGCTAAGGAAGATGTATGATAAATTGAGACTACAAAAGTTGTCAAAGCATATAATggacataaaaatgaaatcaaagaaagacaaaaccataagtgaaacaaatgaaaaggaAAGGCTTAAAGCAATGCTGAAGGAAATTTTCGATAAAGCTCAACAAGACATGAGTAAAAGAAAGaagatttttattctttttccaaGTTGACCTTAAAAAGAGGAAGGTGAAAAAGGGGagttaaagaaaacagaaatcaaaaatACGAGACTGCAAACAAAGcaacttAAATATATTGAATTGGCTatccaaaatattcaaatgataatGTTTCACGAAGAGGCTAGAGACCTCCAGACCATGTACAAGCAACCTGACCCTCTGTGTGAGCTGGCTGATGAATGTTACAAGGTCGGCTGCCTGCTGGCTTTACACAATCCACCTCTGCTGCTCGACTGGGAGAAAAAGAGCCGTCAGATTACCTGCCACCAATTACGATGGAAGACACATCTGCAAAGACAGCTCTGTAGATTTAAAATCCAGCATTAGAGAGATTAGAGACCTCATGTAAAGATTGATTTAGattctatacattttatacttaaTAAACCAATAGTCACTACTTTTAATGTGAATGGTTAGGGGTTGGAAAGCATTCTAATTTTGTCGCAACTTTTGCttagtaaataatgaaaaaacggCATTCAAAATCATGTTCCTGCATGACATTCAGTCAGATATGCTTATTTCTTAAGACTGGCTTCGCCCCAATTTGGCCACCTGAGACCAATTTTCAAAATCATCTAATCCTGGGCTAAAATCTGTATTCTTTGATCGATTCACTGTTTTTACCTCTGACGAAATTCTAGCAGTGTTATAAGATTTTGCGCATACAATAATCCTCCTACAACAAACTTACTTTGTATTTCAAGAATTAATTCTATATTAATTCTTCGCTCTCCTCCTCAACTCGTGAGCCCGGCCTaaaggaaatgatgacagaatttttattttttggtgaactattcttttaagacAATGTCTTGTGAAACTTTCTTCTGGGTGACCctaattgtaaacattttgattttaaatgtcaaacacATTTTGAGTTTTACGATGAACCCTTAAAGgctggaagtgtgtgtgtgtgtgtgtgtgtgtgtgggcagcgCAATCACTTCAGCTGTATTGTTATTAGCAATATCAACTTTAAACACTTACtgtcttaataataatgcatcacTGTATAAAggtatgcttttatttgtttgatacatagtgttttataaaataaagaaaacagatagTATGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248253.1 lncRNA upstream 113851 3135818 ~ 3137271 (+) True LOC122331625
XR_006248254.1 lncRNA upstream 113858 3134894 ~ 3137264 (+) False LOC122331625
TU252802 lncRNA upstream 118524 3122319 ~ 3132598 (+) False LOC122331563
TU252834 lncRNA upstream 216702 3033902 ~ 3034420 (+) True G170741
XR_006248246.1 lncRNA upstream 253336 2991817 ~ 2997786 (+) True LOC122331617
TU253081 lncRNA downstream 224916 3621511 ~ 3625172 (+) True G170903
TU253082 lncRNA downstream 226682 3623277 ~ 3998286 (+) True G170904
TU253115 lncRNA downstream 241576 3638171 ~ 3640016 (+) True G170921
XR_006248263.1 lncRNA downstream 244300 3640895 ~ 3641446 (+) True LOC122331633
XR_006248260.1 lncRNA downstream 328216 3724811 ~ 3727955 (+) True LOC122331631
XM_043228923.1 mRNA upstream 178852 3070296 ~ 3072270 (+) True LOC122331481
XM_043229110.1 mRNA upstream 329931 2887928 ~ 2921191 (+) False LOC122331570
XM_043229003.1 mRNA downstream 170144 3566739 ~ 3571853 (+) True LOC122331519
XM_043229092.1 mRNA downstream 261217 3657812 ~ 3662909 (+) True LOC122331565
XM_043229056.1 mRNA downstream 355278 3751873 ~ 3761133 (+) True LOC122331544
XM_043229055.1 mRNA downstream 355278 3751873 ~ 3761133 (+) False LOC122331544
XM_043229057.1 mRNA downstream 355278 3751873 ~ 3761133 (+) False LOC122331544
XR_006248200.1 other upstream 339421 2877324 ~ 2911701 (+) False LOC122331570
XR_006248201.1 other upstream 339421 2877324 ~ 2911701 (+) False LOC122331570
XR_006248210.1 other upstream 339421 2877324 ~ 2911701 (+) False LOC122331570
XR_006248208.1 other upstream 340210 2877324 ~ 2910912 (+) False LOC122331570
XR_006248209.1 other upstream 340210 2877324 ~ 2910912 (+) False LOC122331570
TU253118 other downstream 577044 3973639 ~ 3974802 (+) True G170923
TU253154 other downstream 707879 4104474 ~ 4105130 (+) True G170953
TU253162 other downstream 772039 4168634 ~ 4169030 (+) True G170961
TU253145 other downstream 785580 4182175 ~ 4185404 (+) False proza
TU253147 other downstream 785580 4182175 ~ 4185404 (+) False proza

Expression Profile