RNA id: XR_006248210.1


Basic Information

Item Value
RNA id XR_006248210.1
length 834
RNA type transcript
GC content 0.40
exon number 15
gene id LOC122331570
representative False

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 2852212 ~ 2921197 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTCCTCCAAGGTAACAAGAAAAGGAACAATGTCAAgaaagTGAAGAGGAACAAGCTGTAATGATCCCAAAGgagaaggaaaatgaaaaacttcaaCAAAGtgATGCTGAAACAGCTGAAGTCCTCCAAGGTAACAAGGAAAAGGAACAATGTCAAgaaagtGAAGAGGAACAAGCTGTAATGATCCCAAAGgagaaggaaaatgaaaaacttcaaCAAAgtgATGCTGAAACAGCTGAAGTCCTCCAAGGTAACAAGGAAAAGGAACAATGTCAAgaaagtGAAGAGGAACAAGCTGTAATGATCCCAAAGgagaaggaaaatgaaaaacttcaaCAAAGtgATGCTGAAACAGCTGAAGTCCTCCAAGGTAACAAGGAAAGGAACAATGTcaagaaagtgATGCTGAAACAGCTGAAGTCCTCCAAGGTAACAAGGAAAAGGAACAATGTCAAGaaagtgATGCTGAAACAGCTGAAGTCCTCCAAGGTAACAAGGAAAAGGAACAATGTCAAGaaagtgATGCTGAAACAGCTGAAGTCCTCCAAGGTAACAAGGAAAAGGAACAATGTCAAgaaagtgATGCTGAAACAGCTGAAGTCCTCCAAGGTAACAAGGAAAAGGAACAATGTCAAgaaagtgATGCTGAAACAGCTGAAGTCCTCCAAGGTAACAAGGAAAAGGAACAATGTCAAgaaagtaatGAGAATCTAGCCGAAACCTGTCCACATCACAAGAAAATTGATGAACTTCGGGAAAGACATGAACGTGACGAGTACAAGACAAAATTTGAGGAATTACAAGCAAGATACGAAAAGGATTTGGAGCAAATAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252814 lncRNA upstream 54658 2821575 ~ 2822666 (+) True G170723
XR_006248255.1 lncRNA upstream 324264 2548301 ~ 2553060 (+) True LOC122331626
TU252739 lncRNA upstream 369887 2297082 ~ 2507437 (+) True G170681
XR_006248252.1 lncRNA downstream 27318 2939019 ~ 2941543 (+) True LOC122331624
TU252826 lncRNA downstream 27390 2939091 ~ 2941498 (+) False LOC122331624
XR_006248246.1 lncRNA downstream 80116 2991817 ~ 2997786 (+) True LOC122331617
TU252834 lncRNA downstream 122201 3033902 ~ 3034420 (+) True G170741
TU252802 lncRNA downstream 210618 3122319 ~ 3132598 (+) False LOC122331563
XM_043229016.1 mRNA upstream 82542 2789245 ~ 2794782 (+) True LOC122331530
XM_043229019.1 mRNA upstream 215119 2658893 ~ 2662205 (+) True LOC122331535
XM_043228991.1 mRNA upstream 380762 2425141 ~ 2496562 (+) False LOC122331512
XM_043228922.1 mRNA upstream 479636 2385443 ~ 2397688 (+) True LOC122331480
XM_043229137.1 mRNA upstream 547500 2321133 ~ 2329824 (+) False LOC122331586
XM_043228923.1 mRNA downstream 158595 3070296 ~ 3072270 (+) True LOC122331481
XM_043229082.1 mRNA downstream 210601 3122302 ~ 3396595 (+) False LOC122331563
XM_043229079.1 mRNA downstream 210601 3122302 ~ 3396595 (+) False LOC122331563
XM_043229080.1 mRNA downstream 210601 3122302 ~ 3396595 (+) False LOC122331563
XM_043229083.1 mRNA downstream 210601 3122302 ~ 3396595 (+) False LOC122331563
TU252742 other upstream 64285 2631377 ~ 2813039 (+) True G170683
TU252772 other upstream 433740 2425157 ~ 2443584 (+) False LOC122331512
TU252659 other upstream 732811 2142280 ~ 2144513 (+) False LOC122331475
TU252426 other upstream 1391939 1481336 ~ 1485385 (+) True LOC122331738
TU253118 other downstream 1061938 3973639 ~ 3974802 (+) True G170923
TU253154 other downstream 1192773 4104474 ~ 4105130 (+) True G170953
TU253162 other downstream 1256933 4168634 ~ 4169030 (+) True G170961
TU253145 other downstream 1270474 4182175 ~ 4185404 (+) False proza
TU253147 other downstream 1270474 4182175 ~ 4185404 (+) False proza

Expression Profile