RNA id: TU252826


Basic Information

Item Value
RNA id TU252826
length 380
lncRNA type intronic
GC content 0.47
exon number 3
gene id LOC122331624
representative False

Chromosome Information

Item Value
chromosome id NW_025047681.1
NCBI id JAEQBD010000026.1
chromosome length 5200000
location 2939019 ~ 2941543 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCCCACAGCCCTCCCGGCACCGAAAGCAGCATCCACAGAACAGGTGGAAATTTCTCCTGGATCTAACGTATTCATTGACAGACTGGCTTGGGCAGTGGCACAGAATGCGAACTCTGCCTCCTGTTTTGTGAGAACACTCCTGACAGCAGTGTTCCCAATTGATGTGCTCCTCGTGAGCAATCTTCGAGGAACATCCAAGGATTCTGGACCACAACGTCAGGCtcttgacaaaataaaagtggatGCTATCTACAGAGCAACATTGCAAAAGTGGCCTCACGTGGTGCCCTCCAGCATTGGTGCAGCCATCAATGccaaattaacagaaataagaggaaagaaaaaaacacaaaaacattcggAAACCTTGATGCTCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252799 lncRNA upstream 43838 2852212 ~ 2895253 (+) False LOC122331570
TU252818 lncRNA upstream 53799 2855983 ~ 2885292 (+) True G170725
TU252814 lncRNA upstream 116425 2821575 ~ 2822666 (+) True G170723
XR_006248255.1 lncRNA upstream 386031 2548301 ~ 2553060 (+) True LOC122331626
TU252739 lncRNA upstream 431654 2297082 ~ 2507437 (+) True G170681
XR_006248246.1 lncRNA downstream 50319 2991817 ~ 2997786 (+) True LOC122331617
TU252834 lncRNA downstream 92404 3033902 ~ 3034420 (+) True G170741
TU252802 lncRNA downstream 180821 3122319 ~ 3132598 (+) False LOC122331563
TU252796 lncRNA downstream 191637 3133135 ~ 3396593 (+) False LOC122331563
XR_006248254.1 lncRNA downstream 193396 3134894 ~ 3137264 (+) False LOC122331625
XM_043229112.1 mRNA upstream 17894 2887928 ~ 2921197 (+) False LOC122331570
XM_043229107.1 mRNA upstream 17895 2887928 ~ 2921196 (+) False LOC122331570
XM_043229100.1 mRNA upstream 17896 2887928 ~ 2921195 (+) False LOC122331570
XM_043229106.1 mRNA upstream 17896 2887928 ~ 2921195 (+) False LOC122331570
XM_043229111.1 mRNA upstream 17897 2887928 ~ 2921194 (+) False LOC122331570
XM_043228923.1 mRNA downstream 128798 3070296 ~ 3072270 (+) True LOC122331481
XM_043229082.1 mRNA downstream 180804 3122302 ~ 3396595 (+) False LOC122331563
XM_043229079.1 mRNA downstream 180804 3122302 ~ 3396595 (+) False LOC122331563
XM_043229080.1 mRNA downstream 180804 3122302 ~ 3396595 (+) False LOC122331563
XM_043229083.1 mRNA downstream 180804 3122302 ~ 3396595 (+) False LOC122331563
XR_006248200.1 other upstream 27390 2877324 ~ 2911701 (+) False LOC122331570
XR_006248201.1 other upstream 27390 2877324 ~ 2911701 (+) False LOC122331570
XR_006248210.1 other upstream 27390 2877324 ~ 2911701 (+) False LOC122331570
XR_006248208.1 other upstream 28179 2877324 ~ 2910912 (+) False LOC122331570
XR_006248209.1 other upstream 28179 2877324 ~ 2910912 (+) False LOC122331570
TU253118 other downstream 1032141 3973639 ~ 3974802 (+) True G170923
TU253154 other downstream 1162976 4104474 ~ 4105130 (+) True G170953
TU253162 other downstream 1227136 4168634 ~ 4169030 (+) True G170961
TU253145 other downstream 1240677 4182175 ~ 4185404 (+) False proza
TU253147 other downstream 1240677 4182175 ~ 4185404 (+) False proza

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU197523 True 214 lncRNA 0.48 3 CM030142.1 18945823 ~ 18947076 (+)