RNA id: TU269043


Basic Information

Item Value
RNA id TU269043
length 1161
lncRNA type sense_over
GC content 0.43
exon number 5
gene id LOC122333698
representative False

Chromosome Information

Item Value
chromosome id NW_025048028.1
NCBI id JAEQBD010000373.1
chromosome length 1110666
location 257630 ~ 326730 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aggggttgtttttaaataaaactcgATTGTTCTCCTGAAAACTAAATTTCCTTTCGATTTCCGTGAggaataaacaattaaattaaaactgaatcaACTCTAAACGAAACAAAATACTCACctgctgaagaaagaaaaagaggggggtaaaaaaaaaacaaaaaacaagtttaAGCAGCTTTGAAATTGTCAAAGAGTACAGATGAGCTCCTGAATCAAATGACCCCGCTGTTCTGCCTGGtgacaaacacaaagacacatcAAGCAGCTGATTATTTCACGCGTTAATTTCTCACACGCTCTGATTTTCCTTCTTCCAACGGCCCCGACGTCCACAACATGTTTTCTTAAGAAATAAACTCCCAGACCGGCGTCCTTCCTCCCAGACAATTACGGGTTTTGCGCGAGACATTGTTTCGTCTGAATGTTGCGGTCATTATGGCTTGATTTGCATATCGAGCATCGCTAATTTCCTCGGCGCGTCTGAACATGGCTGCGCGTAACAAACAGGACGACGTCACCGAACGTGGACCCCGCGTAAAAACGAGTCTGAAAATTACAAACCGACAACGCTGggatgaaaatgagaaaataactgggaaaaaaaattaacaacgCTGTTACTAAGTGGGGGGGTGTTTATAACGCTTCCTAACGTGCTGAAAACCTCAGTGAGAAGACGCGCTGGAAAAACACGCGCCCTGTTCAGACCCTCTCATCCCGTGGATGGAATAAGACGCTTTCGAAAGACGGCCGCCGAGCGCGTTTCCGGCGAACCGGTCGTGGGAGGCTTTCGTGGACGTGATTTGTAATCGAGGATGTTCGTTTGTCCGTTTCACATCCAGATGATGGTTTTTCGGTGCCGCGGGGAGTCCGAGGAGAATagGCAGCTGGAGCTCCGAGTCGCCCGCAGGAGGAAGTGGAGGCAGCGCTGCCTCGTGAGGCTGATGCAACATGAGgGACGGAAGACAAATGAAAGTTGCTTTGGTTTCACATCAATAAGAGCCCACGAGATGCAGAAGATGGTTCAAGCAAAtggtaaaaaatacaaaataaataaaaatcccttTGATGTATATGTTaaaaccaatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaatataaaaatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269028 lncRNA downstream 42933 213585 ~ 214697 (-) True G181297
TU268995 lncRNA downstream 75706 133827 ~ 181924 (-) False tmem167a
TU269063 lncRNA upstream 82 326812 ~ 328227 (-) True G181325
XR_006248662.1 lncRNA upstream 109318 436048 ~ 438104 (-) True LOC122333706
XR_006248661.1 lncRNA upstream 109318 436048 ~ 437992 (-) False LOC122333706
TU269100 lncRNA upstream 181439 508169 ~ 510043 (-) True G181353
TU269106 lncRNA upstream 227760 554490 ~ 555624 (-) True G181359
XM_043231554.1 mRNA downstream 13478 238102 ~ 244152 (-) False hapln1b
XM_043231553.1 mRNA downstream 13627 238102 ~ 244003 (-) True hapln1b
XM_043231417.1 mRNA downstream 75622 176837 ~ 182008 (-) False tmem167a
XM_043231421.1 mRNA downstream 116791 85883 ~ 140839 (-) True ssbp2b
XM_043231419.1 mRNA downstream 172578 77096 ~ 85052 (-) True LOC122333719
XM_043231522.1 mRNA upstream 3013 329743 ~ 368431 (-) True mef2ca
XM_043231523.1 mRNA upstream 3013 329743 ~ 368428 (-) False mef2ca
XM_043231524.1 mRNA upstream 5659 332389 ~ 368427 (-) False mef2ca
XM_043231415.1 mRNA upstream 62214 388944 ~ 391935 (-) True cetn3
XM_043231496.1 mRNA upstream 79507 406237 ~ 411767 (-) True arrdc3b
TU269072 other upstream 62236 388966 ~ 391922 (-) False cetn3
TU269094 other upstream 270162 596892 ~ 598645 (-) True G181349
TU269158 other upstream 354338 681068 ~ 682862 (-) False tacr1b
TU269300 other upstream 424214 750944 ~ 754507 (-) True G181475
TU269313 other upstream 462513 789243 ~ 790846 (-) False ved

Expression Profile