RNA id: XM_043239581.1


Basic Information

Item Value
RNA id XM_043239581.1
length 2647
RNA type mRNA
GC content 0.48
exon number 16
gene id susd1
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 419242 ~ 431465 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtgtcgaggGGTGTGTAAGGAGGGTGATAGGGCAGAAAACGCTTATCTTTTACTCGCCACCCTCCAGAATTTGGCGCAGTAAATATGTCACGCTTACGCGCTGAGAAGTGTTATTTGTACTCGTCATGACATTATGAATGTTATTGTTGTTCTTTAGAATAATCGTAAATAAAActtcatttgttttatgaagTAGGTTATTCTTGTGTGCTTCAGAAATACAGTATGTAGACCACAACCTTCACCTTTCAAAAGACTTCAGAATGGAGGAGGAGGGTCTTTAAGGGGAAGTTAGGagaaaagtgatattttaagTTCGCCGGAACAGATGAGAGAAAAACAGCGATGCCTGTCGTACGAGCGGCCTTATGCTTTCTGATGATTCAAAGCATCTTTAAAGATATAAGAACGAAGGCGGACACGGTGGATGTTTGTGCCTCTTGCCATCAAAATGCCACCTGTGATGATAAAACCGACGGATCTGGGGGGAAAGTGTGCAACTGCATGTATGGATTTGTTGGCAACGGGAGGACTTACTGCCAAGATAAAGACGAGTGTCAGCTGGGCAAAATCTGTGGCGATCACACCAAGTGTCACAACACGTATGGCAGCTATTACTGCACCTGTCTCAGAGGCTACAGCCCGTCCAATCGCATGAGCACGTTCATACCCAATGATGGAACGTACTGCCTTGATATAGACGAGTGTGGTGTGCAGGGGGTCTGTGGTGAAGGAGGTCTCTGTCACAACACAGAGGGAGATTTCACCTGCTCCTGTCAGGTGGGTTACACAGTCCAGGATGGGTCAGAGCCCTTTAATCCGAACCGGGATGCAGCATACTGCAAGGTGATAGACTGTGGGTCTCCTCCATCAGTCCTCCACGCCGAGCAGCTCTCTACCACGATCACGCACTACAGCAGTGAGCTCCAGTACGGCTGCAGGGAGGGATTTCAGTGGAAGAGAGGACAGAATTACTCAGTCTGTGACCTGGACGGAAAGTGGCACGGACCCAGTCTGGTCTGTGAAGAAGTGGACTGCGGGGAGCCTGGCGTTTTTCCTCGGTCAAAAGCGGTTTGGGATAACATCTCACGCATGGGATCACTGgcgctgtatgtgtgtgagccACATTTTTATAACAGTGGGCGTGAGAATGTATCTGTATGTACTGCTGGCGGGACGTGGAGCCGTCCTGACTTCCGCTGTGAAGagatACAGTGCGGTTCTCCTCTGGTCCTGAGTCACTCAGTGTTGTTCTGGAACGGTGTCAGTAAGATTGGTTCCGTGGCTCTGTATGACTGTGATGTTGGATATCGCAGTTTGGATGCAGGCaacatgtctgtgtgtgaaagTGACGGTCAGTGGAGTAACCCAGACTATTCTTGTGAAGAGATTGTGTGTGGGGAGCCACCTATACTGCCCCTCACTGTACACACATGGAATGGCAGAGTCACATTTAACAGCACTGTAACATATCACTGCAAACACGGTTACTATGCTAAACAAGGACttaatatatctgtgtgtgctgAGAACGGTTACTGGACAAAACCAACTCTGTTGTGCGAAGagGTGAGCTGTGGAGTGCCGCCTTCTCTCCACCTCTCTGTTATGATATGGAAAGGAGACGCTAAAGTTGGATCTAGTGTGTCTTATAAGTGCGTTGAGGGATTTCATAATGTTAGGGAAGGACATACATCAATTTGCAATTCAGAGGGAATGTGGAGTCGTCCTGATTTTCTGTGTCAAGaaGTAGACTGTGGGGTCCCCGTCTCTCTACCTCACTCAGTCGTGTTATGGAATAACAGCTCCAGTCTGGGCTCTGTGGCCCTCTATGCGTGCGAAGCTGGATATCGCACAGTGGGTGAAGGAAATGTGTCTTTGTGTAACTCAAATGCGAAGTGGAGCAAAGTTAGCATGAGATGTGAAGAGATAAACTGCGGGGCTCCCCCAGAATTCCCACTAACAGATATATACTGGAACAAGGCATCTACACTGGGCAGTGTGGTTcagtacaaatgtaaatatggGCTCAAACAGGAGAGTGACAAAAATATGACGACATGTACATCAGATGGATCATGGGAAAAAGTGTCTGTAACATGTACAGCACATTGTGGCCCTGCTCCAGAGGTGGCGCACGCGGAGGTAGCATGGGACAACGGCACTGCAGTGATCCACCGCTGTGTTAGAGGACACTACAGACGCACAGGAAGTGACATTTCAATATGTGACATCTCAGGAAAGTGGCAGATCGCCACCCTGCATTGCAAAGAGTTGAAGCTGACAGTTAACCATTTAGTGGTGATTAACGAAAGATGCCTGCGCTGGAATGCGGAGAATGAGGGTTATAGGGAGAAATACGCTGTGACATTCGTTGGTTCGCGGGACTTTGAGCAGCCGTTcagtgacaggaaaaaaaagacatttagctCCTCTGCCCTGTGGCCTGTTTTCTGCTTGAATCTCTTGCCGGCCACAAACTACACCATAACCATTACAGCCGAGTCCACGCGAGCCACGTCTACAGTCACAGCGAACACTAGCATACCAGTTCCCCCCACACCGTAAATCAAATACAGCGAGGTAGAGGCTTCATCGCCCACCCTCAGATTACGGAGATCCACTAACACACTTGACTCAATATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251090.1 lncRNA upstream 16866 398821 ~ 402380 (+) True LOC122346098
TU47219 lncRNA upstream 21460 396160 ~ 397786 (+) True G32003
TU47218 lncRNA upstream 23460 390872 ~ 395786 (+) True G32002
TU47216 lncRNA upstream 28140 389941 ~ 391106 (+) False rchy1
TU47210 lncRNA upstream 35027 383514 ~ 384219 (+) True G31998
TU47239 lncRNA downstream 3088 433028 ~ 433805 (+) False LOC122346012
TU47261 lncRNA downstream 44391 474331 ~ 474857 (+) True G32024
TU47263 lncRNA downstream 56063 486003 ~ 486240 (+) True G32026
TU47270 lncRNA downstream 67751 497691 ~ 498900 (+) True G32032
TU47281 lncRNA downstream 126785 556725 ~ 560608 (+) True G32042
XM_043239585.1 mRNA upstream 2044 414822 ~ 417202 (+) False si:ch211-12e13.12
XM_043239586.1 mRNA upstream 2044 415023 ~ 417202 (+) True si:ch211-12e13.12
XM_043239583.1 mRNA upstream 4372 411450 ~ 414874 (+) True si:ch211-12e13.1
XM_043239584.1 mRNA upstream 4372 411452 ~ 414874 (+) False si:ch211-12e13.1
XM_043240632.1 mRNA upstream 24782 389910 ~ 394464 (+) True rchy1
XM_043240633.1 mRNA downstream 2839 432779 ~ 447486 (+) True LOC122346012
XM_043238314.1 mRNA downstream 20228 450168 ~ 451365 (+) True tal2
XM_043239497.1 mRNA downstream 24142 454082 ~ 462279 (+) True LOC122345394
XM_043239493.1 mRNA downstream 34141 464081 ~ 483423 (+) False LOC122345389
XM_043239494.1 mRNA downstream 34214 464154 ~ 468427 (+) True LOC122345390
TU47222 other upstream 11585 402573 ~ 407661 (+) True G32004
TU47217 other upstream 24787 392551 ~ 394459 (+) False rchy1
TU47246 other downstream 20252 450192 ~ 451365 (+) False tal2
TU47584 other downstream 625253 1055193 ~ 1057153 (+) True G32277
TU47619 other downstream 682556 1112496 ~ 1115405 (+) False selenoe
TU47965 other downstream 1361920 1791860 ~ 1793243 (+) False ccl19a.2
TU48046 other downstream 1392714 1822654 ~ 1826114 (+) True G32611