RNA id: XM_043239584.1


Basic Information

Item Value
RNA id XM_043239584.1
length 1765
RNA type mRNA
GC content 0.43
exon number 6
gene id si:ch211-12e13.1
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 411450 ~ 414874 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTCTTTTAAAATCACGATGAGAATATCAACAAATAGAAGAAACGCGCAACAAAGTAGCGTAAAGTGACTTTGAACTTTGAGCACATCATCAGTAGCATTTCTTCTAACTCGTTTTTGTGAGCGACGTGAATGATGAACCGGGATATGGATCGTTTTAGCACATTCGTGGCCGTGGTGTCAGAGACACCTGCCGGGTTCAGTTTACCTCATGACCAGATACATGTATGAATCTCTCCGCAAAAAACGAGGAACAATTAGGAAAAACACAGACACGAATGACGAGCTTGCGTTCACTTTGATCAACTGCAGGTATGATGTCGTATCTTTGAGGAGGTTCTGCAGCGTTTCAGGTTATGATTGGGACTATCCTGACAGTGTCTTCAGAGACGTTCCCTTGTGCTACCCTGAGTTTCTCTTCAGCAGACTTCTCTCTATGATTGTGTGCTCCGAGAGATTCAGACTAAGCCCTTTGGGTCTGTTAAGTGTCCGTGAGAGTTTGAGTTTGATGGATGCCGTGGATGAGCTGAAGAGAGGAAAGTTCTCCCTGCAGATCAGAGTGCTGGAGTACAGGACTGTTAGTGCCGGAGTGGAGGTGGATCTCACTTTAACTGTATCCAGAGATCAGCAGACCGTTTGGAGCAGCACACTGACCCTACTCTCTCCCAACAATACATACAGACCTGATTCTCAGCCTGACTTGGAGATCACCCATGATCCGGTCTCGGAGAGATGCATCAGCCTGACTGTTCCTTGGTCCACAGCTGTGAGGAGCACCTCGGTGTTTGGTGACCTTTGCCCTCTGCCTGTGTTCGTTTGGCTGGGATTTACCCATCCCACCATGCACCCGCTGTGGATGTTCTCCAGATGCATGGCAGAAATGGAGAAACACAAAGGAGTAGAAGCGGTGAGAGCTCCTCTGACTGTGTCAGTCTGTTACAAACAGCCTGTATCATTACCAAGGAAAGTCAACATCAGAGTCAGTGAAAACACTAGAAAGACCTTTTCGTTGGAGGACCACAGAACCGGGACGCTGTACCTCTCGGGACAGATAAAACAACAGACAAGCGAGAAAGCAGAATGATGCTCATGTAATCTTTTCAGAAAGGATACTAAGCACTCAACGGCGGGGTGTCAGACGGGGTGATAGCGGAACTGAGTAACTTTCCTGTCTACATTTCAACGTCTCATTTAAACAGggttatattctatatttttgctttgcattatgcattatacaATAATGAATTCTTTGTACATGTGCAGTCaaatcacttttaatcaatgtCTGTGTCAGTAGGGGAGGAGCTTGAGTGGAGGGCCgtttttcatgaatatttcagtCTCTCCCCTCTTTCCTCAGTCGTGCCTTTCTCTGTGCATGCACACGTGTGTGTATAAGTGCTCCAtgtgtattattcattattatgtgTTCAGCGTATGAGGAGGGgtttctcacacaaacaacTTAACACGCGTGTGTGTACcaatagtatataaaataatatgacgGTAATTTGTGAAATgatcatttgtatatttgtaggcatttaagaaaataattgtaatgatCAGTTATCAGTGGTAATTTGCATTGTCCCATATTATGGTCtgtgtaatatatttcattttaggaTACTTTATACACGTATGAAGTGATTTCCTGACTGTATATACAACTATACAAATAGCTTGTAGAACTGTTGTGTAGGGTGTGTAGTCTAATagacatcatttatttataaaggccTGAATCTGTCGGGTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251090.1 lncRNA upstream 9072 398821 ~ 402380 (+) True LOC122346098
TU47219 lncRNA upstream 13666 396160 ~ 397786 (+) True G32003
TU47218 lncRNA upstream 15666 390872 ~ 395786 (+) True G32002
TU47216 lncRNA upstream 20346 389941 ~ 391106 (+) False rchy1
TU47210 lncRNA upstream 27233 383514 ~ 384219 (+) True G31998
TU47239 lncRNA downstream 18154 433028 ~ 433805 (+) False LOC122346012
TU47261 lncRNA downstream 59457 474331 ~ 474857 (+) True G32024
TU47263 lncRNA downstream 71129 486003 ~ 486240 (+) True G32026
TU47270 lncRNA downstream 82817 497691 ~ 498900 (+) True G32032
TU47281 lncRNA downstream 141851 556725 ~ 560608 (+) True G32042
XM_043240632.1 mRNA upstream 16988 389910 ~ 394464 (+) True rchy1
XM_043240373.1 mRNA upstream 28589 375744 ~ 382863 (+) True idua
XM_043240375.1 mRNA upstream 35933 373796 ~ 375519 (+) True si:ch211-155m12.1
XM_043240368.1 mRNA upstream 38350 353037 ~ 373102 (+) True tnksb
XM_043239586.1 mRNA downstream 149 415023 ~ 417202 (+) True si:ch211-12e13.12
XM_043239580.1 mRNA downstream 4368 419242 ~ 429839 (+) False susd1
XM_043239579.1 mRNA downstream 4369 419243 ~ 429839 (+) False susd1
XM_043239581.1 mRNA downstream 4372 419246 ~ 429940 (+) False susd1
XM_043240633.1 mRNA downstream 17905 432779 ~ 447486 (+) True LOC122346012
TU47222 other upstream 3791 402573 ~ 407661 (+) True G32004
TU47217 other upstream 16993 392551 ~ 394459 (+) False rchy1
XR_006251007.1 other downstream 4372 419246 ~ 431465 (+) True susd1
XR_006251006.1 other downstream 4372 419246 ~ 431465 (+) False susd1
TU47246 other downstream 35318 450192 ~ 451365 (+) False tal2
TU47584 other downstream 640319 1055193 ~ 1057153 (+) True G32277
TU47619 other downstream 697622 1112496 ~ 1115405 (+) False selenoe

Expression Profile