RNA id: TCONS_00010209


Basic Information

Item Value
RNA id TCONS_00010209
length 1900
RNA type mRNA
GC content 0.44
exon number 3
gene id XLOC_005318
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 20056971 ~ 20120711 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATTTGTGTTTGCTCAACCGGCTGTAATGGTGGACGACTGAAAGAGAAAAGCGGAGAGAGGCTAAATCTCGAAAATCCTGTCCCGGGTGAAAACACCAGTGTTCGTGGCTCGGAAACAAGCACCAGCCAAAATGGATGAACTCAAACATCAAGTTATGATCAACCAGTTCGTCCTGACAGCTGGATGTGCCGCAGACCAGGCGAAACAGCTTTTGCAAGCGGCACATTGGCAGTTTGAGACAGCCCTCAGTGCCTTCTTTCAAGAGACAAATATCCCTTATGGTCACCATCATCAAATGATGTGTACTCCTGCCAACACACCAGCGACGCCACCAAACTTCCCAGACGCACTCACCATGTTCTCGCGACTTAAAGCCTCGGAAAGCTTCAACAGCAGCAGCAGTCCCAGCATGGCCACCTCACCCCCTCCACCCCCAGTCAGCTGGGGCATGGCCCCACCCATGGCCAACCAGCAGAGTTTATGGACTCAGGGCCCGTCCGCCCAACAGACCCACCCACCCCCAGGCTGGCCCTCAGCTGTCAACCAGCAAGCAGCATCTGAACAGAAGGCCAGTGCCGCAATGGAGGCCGAGAGATGAGGGCCTGGACTACCTGTCCTCCTTCCCACCTTCACTGACCCATGGAGCGAGGGTTCGGGGAGGGCTCTCGTTTTTCTCTTTTACTCACCAAACATGGAGGCAGAGAGAGCTACACCAAGAATAACCAAGCAACATGGACATTTACAGAAGAGGAGCGAAAGCCAACAAGAAGGTAATACGCGGAAGAACGAAACAAGCGCACATTGTATTACTAAGAAAgagagcaagttttttttataatgaaagAGTAGATTAACATTTACGGGACTATGATCATTGCGCCTGTGGATTATTTCTGATATTTTCTCAAAGATTGACGTCTAGCATCTAAGGCAGCAACTTTTCTCAACGTTTTCCTTTTGAATTCTTTTATCTGGTGTTCTTTATGCAAGACGTTGCATGTGGATTAGCGATCTGTTTTTTGCGGTTTTTAACTAACTAGTATTCAATGCAAGCGTTcatgtgtacagtgtgtgtgtgtgtgagaaagagagactgACACACTTAAACATTGTATATGGGACTGATCTTTTCTCTCCCCGTTGGATAATGGGACTTTTTCGTACCTCACTGGTCACCTGACACTCTACTCAACCAATCAGGGAATCTTCCTAGTTGAACACACTTTTTTGAACCGGATTTTTCCATCACGCTTTGCTTTATATCTATTAAGCGGTAGCTCACTGATGTCCTCAGAGATTGTCTGAAAATAGATTACGAAAGATCTGGGTGTTTTATAATCATGGTTTGTAGTTTTATTGGAATCTGTCTGGAGGGAGCTTTTTTTCCAGACTGTTGTTTCTTAGTCGGGGAGAGTAAATCCACGCCGCTAAAGCTACATTTGAAACCGGACTACTATACAACATGTTTGTAAGCAGACTTGCCACTTTGCATGACGTATTCACATGTATATCATATTTTGTAGTTTCTTGCTTTTTGGGGGAATTCTACATGAACGCTTTTTGGGGAATTCTGTCTTATTGCTAGTTTTAGTCGAAGATCTCCAATTCAACTTGTGATTCTGGCACCATCTGCTTTTCTATTGCCGTTTATTTCAAATGATGAATccgaagaaagaaagaaaaactcatTTGCTGATCtacaatgttttattttccatttacACCAGTTTCTGATCAAACTTTTTCTTTCGGGGTCCCTTGTTCCCAAATGGTTTTCCATGTATGTTTTCCCCTGTTTGACTGTATTGAGACCATTCCCACAATATTTGTGGACTACCTGATAATTAACTTATCATTGTTTGTGTtcctaaataaatattgtatgtcCTATGATATGA

Function

GO:

id name namespace
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009070 serine family amino acid biosynthetic process biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006563 L-serine metabolic process biological_process
GO:0006564 L-serine biosynthetic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:1901265 nucleoside phosphate binding molecular_function
GO:0036094 small molecule binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0051087 chaperone binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-040718-191 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human UBALD1 (UBA like domain containing 1).

Ensembl:

ensembl_id ENSDART00000112768

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011120 lncRNA downstream 33018 20056971 ~ 20065827 (-) False XLOC_005318
TCONS_00010204 lncRNA downstream 816836 19278390 ~ 19282009 (-) True XLOC_005315
TCONS_00011119 lncRNA downstream 1644438 18453207 ~ 18454407 (-) True XLOC_005298
TCONS_00010174 lncRNA downstream 1684329 18413442 ~ 18414516 (-) True XLOC_005297
TCONS_00011118 lncRNA downstream 1687092 18410611 ~ 18411753 (-) False XLOC_005297
TCONS_00011121 lncRNA upstream 194284 20314995 ~ 20334709 (-) True XLOC_005321
TCONS_00010219 lncRNA upstream 285875 20406586 ~ 20409746 (-) True XLOC_005326
TCONS_00010222 lncRNA upstream 459855 20580566 ~ 20584439 (-) False XLOC_005327
TCONS_00010223 lncRNA upstream 460178 20580889 ~ 20581988 (-) True XLOC_005327
TCONS_00011123 lncRNA upstream 2043319 22164030 ~ 22220870 (-) False XLOC_005335
TCONS_00010206 mRNA downstream 233260 19792281 ~ 19865585 (-) False XLOC_005317
TCONS_00010207 mRNA downstream 235933 19793374 ~ 19862912 (-) True XLOC_005317
TCONS_00010205 mRNA downstream 752167 19340786 ~ 19346678 (-) True XLOC_005316
TCONS_00010203 mRNA downstream 816725 19275387 ~ 19282120 (-) False XLOC_005315
TCONS_00010202 mRNA downstream 819742 19272963 ~ 19279103 (-) False XLOC_005315
TCONS_00010212 mRNA upstream 106684 20227395 ~ 20303438 (-) True XLOC_005320
TCONS_00010213 mRNA upstream 218702 20339413 ~ 20340543 (-) True XLOC_005322
TCONS_00010214 mRNA upstream 229154 20349865 ~ 20350629 (-) True XLOC_005323
TCONS_00010215 mRNA upstream 233980 20354691 ~ 20362041 (-) False XLOC_005324
TCONS_00010216 mRNA upstream 234428 20355139 ~ 20362061 (-) True XLOC_005324
TCONS_00010183 other downstream 1360316 18738413 ~ 18738529 (-) True XLOC_005303
TCONS_00010161 other downstream 2391944 17706792 ~ 17706901 (-) True XLOC_005289
TCONS_00010135 other downstream 3100403 16997206 ~ 16998442 (-) True XLOC_005275
TCONS_00010131 other downstream 3197086 16901645 ~ 16901759 (-) True XLOC_005269
TCONS_00010127 other downstream 3352298 16743282 ~ 16746547 (-) True XLOC_005265
TCONS_00010211 other upstream 68458 20189169 ~ 20189286 (-) True XLOC_005319
TCONS_00010220 other upstream 454929 20575640 ~ 20584439 (-) False XLOC_005327
TCONS_00010232 other upstream 1449072 21569783 ~ 21569899 (-) True XLOC_005332
TCONS_00010235 other upstream 1552238 21672949 ~ 21680620 (-) False XLOC_005333
TCONS_00010242 other upstream 2110435 22231146 ~ 22238004 (-) True XLOC_005336

Expression Profile

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