RNA id: XM_043246801.1


Basic Information

Item Value
RNA id XM_043246801.1
length 4338
RNA type mRNA
GC content 0.44
exon number 17
gene id sema3h
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12595949 ~ 12612593 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cgagagaggggtGGGCACAATTGGGACAGTTCCCTCCTTCCCAGCAGGGGAGTGTTTGAAAGAAAGGAGTGAATGATAAGAGACGGctgaaggagaaggagagagatCAGAAAGAGTTAAAAGATGCAGAGGGCAAGACAATAAGAGAGTGAACAAAAACGAAGACAAATTCAGACAGCAATGTTATAAACACGGAAGACAGACCGAGGGAGGATTCTGCTGCACCGCTGACCTGAGCAGGATTACATTACACTGcactgcacacacacttacGCAGAGGTGCGTGATGCTGACATCAGGTGGACaccatttgtgtgtgttatatttttgaGCAGATCACTCagagagggagagtgtgtgtgtttacttcgAGCTAGAGTcgcatagtgtgtgtgtgtcagccaTGAGGAGGATGCTGGCTCTCTTCTGCTTAATTTCACTGGCAGCACCTCCAACGAACGCATGGAGACCATCACAACCACGACTGCACTTCCAGCACTCAGAGCTGGTGCGGAGCGGCAGGCTCATGTCTCTCTTGTTGCCTGCTGGGGATCTGAACTCTCTGCTGCCAGATGAAGATGGTCGTCGTCTATATATCGGCATGAAAAACCATCTGCTGTCCACCAGCTTGGATGATATTACTCAAACCCCCCGCAAGATATACTGGCCTGCAAGTCCGGATCGGATTCAGAACTGTATCATGGCTGGAAAAAACCAgcagACGGACTGTGGAAACTTCCTGCGTGTGTTAGAGCTGTATAACCAAACACATCTTTATGCCTGTGGGACTGGAGCGTTCAACCCTCGCTGTGCCTTCATCCCCACCAACCTCTTCCTCAGGGCTGAGGAACAAATGCTGCAGTATGAAGACACCGAATCCGGTAAGGGAAAATGTCCTTATGACCCTCACCAGAGAACAGCTACCGCCATCATAGATGGAGAGCTGTACGCTGGCATCTCATCTGACTTTCTAAGTCATGACACTGCTTTTATTCGGAGTCTGGGGGAGCGACATGCCATTCGCACTGAACAATATGACTCTACATGGCTGCAAGGCGCTGAATTTGTGCATGTTGCAGCGATGTCAGAGAGTGATAATGAGGAGGATGATAAGGTCTACGTGTTCTTTACTGAGCGCGCACAGGAAGCAGAGGGGGCTGTTGGGAAGGTCCTCTATTCTAGAGTCGCCCGCGTCTGCAAGaaTGATATTGGTGGTCAACGTAGTTTGGTTCATAAATGGAGCACCTTTCAGAAAACTCGTATTATTTGCTCCGTACCAGGACTCGATGGCATACAGACACACTTTGACAAACTCGAGGATATTTTCATTCAGCATGGGAAGGATAAAAAGAACCCCCTCATCTATGGGCTCTTCACCACTACCAGCAATGTCTTGAATGgatctgctgtgtgtgtttaccgCATGCAGGATATTATTAGAGCTTTTAAGGGAAATTTCCTTCATAGGGAGGGTCAACAGTACAAATGGACGGAATATACAGGCAGAGTTCCCTATCCTAGACCTGGCACATGTCCCAGCAGCACATATGGAGGGTTCAAATCAACAAGGGAATATCCTGATGAGGTCATCTTTTTTAGCCGGACGCATCCTTTAATGCAGGAAGTTGTACGTCCTCTTGGAGGTCATCCTTTGCTCATCAGAGTGGGCGTGCCCTATAAACTGACCCGCCTCCTTGTGGACAGAGTGGAGGCGGTGGATGGACAATATGACGTGCTGTTTATTGgtacagATTCGGGCTTGGTTCTGAAAGCTATTCACCTGCCAAAAGCCAACAGACAGAATCAGGAAATCACTCTGGAACAGCTTCAGGTTTTTAAGAACAAGTCACCAATCACTGCCATGACGCTATCCAAGAAAAAGCAGTGGCTGTTTGCTGGATCAGCAGAGGGTGTGGTTCAGTTGGGTCTGTTCCACTGTGATTTGTATGGCCAAGCCTGCGCTGAATGCTGTCTCGCTAGAGACCCATATTGCACCTGGGATGGCCACTCTTGCAGCCCTTACATGCCAAATGCACGCAGAAGAAATATTCGTCAGGTTAATGATGACGGCAACCCGCTGAACCAGTGTGTCAGACAAGGAGCTGGTCTTCAGGTGGACGCAGAGGAGAAGACACAAGTTGTTGCCTTGGGTAATAGCACATACCTGGAGTGTCTACCCAAATCTCACCATGCCACAGTCACCTGGTTTAAAGACATCGGCGATAACAGCTTGGAGCAGCATAAGGTCACATCTGGAGAGCAGCTGGTTGTCATTGACAGGGGCATCCTCATTCCCCGGGCTGAGCTCAATCACGGCGGCATTTATCATTGTCAGCTCGAAGAGCATGGATTCCGTTGGACAGCCGTCACCGTTCGTTTAATTGTGTGGAGCCCCACCCTGCACCCCACCCTTGTCTCCGCCCAGCCATGGTACCAAGATGTGATGGCACTGATCAACCATGGCAAACTGGAGCGACACTGCAAAGAACTCAGTCAGCGCCACAACAAGAAGGAATCAGGGAACCACAAGCATAACAAGcaggacagaaagagagcggACCGGCCCAGGCACAGAGGAGGGGGAGAGAAGGAGAAAGGAAAGGGGCGGAAGAACCGGAGCCGAATGCAGAGTTCAGCACAGAGGCTGCCGAGGAGCGCATAGACCCAATCACAGGTGTTTACAAAGCTGCTCGAAACAAAAGAATACGACAAAACAtgcaatatacagtatatacacagtacatatacacaGCATCATAACAGCAGACATTTGCTTTGTTTCAAAACCTACTGAGCTGCCTGCATGCAGGtttcaaaaaaatacatgcaagaTGGGGGATGACAAAAATTGTAGCActgtttcctcaaaaatattaatcagcacaGCTGATTTCATAAttgatagtaataataaatgttccttGATAACaccatatcagcatattagaatgatttatgaaggatcatgtgaagactggagtgcgttttagaaaatatatttaaatagaaaacgtatattttaggtattttactgcattttgattaactaaatgcagccttggtgatcaTAAGACATTATTTCTTACTGACCCTCAAACTTATTAACggtattataatttaaaacatattattttaccaTATATTTTGTCTATGTTAAGACATGCTAACTGAAAAATTCATTGCATGTCAAAAATATGTGTGTTATCCAGAATTGTAGAGTGTCAGATCTCCCAATGAGCTCAGTAACAAGTAGAATGCTGCCTATGTAGGCAGTGAGGCAGCTCACTGGGTTTTGAAACAAAGCTAGTATCTGAATCATATGAAGGATTGTCGCCAAGCATATTAAGAATGAACAGCTATAGGTGTGgtgaaaaagaagtgtttaCTTTAATATCAAAAACCAACTGATTATTTCAGGACTGTGTTAAGCACATTTGATAAATCTTTAAAAGCAAGGGAGTGTCCCCAAATTATCCTCTGTTGAATAAAAGATAAATCTTCCAAAGTTAGGGAGCatcttaaaatgttctttgtttaaaaagactTCAGTGTTGATGGCACTTTTTCATCTGTACTGAAATGCATTGCCTTATTTATCTTTCATGGTATTTATTTTccttgtgtttttgtgctttttttgtttatattgtcTTGCATTTTAAGTGTAAAAATTGTACAtggtattatttctttttagtttttaaatacagtgtaATTCTTTTTCTGATGTCACtcattaagacatttatttaaataaatgaacgaaAGAATAAGTCCCAAAATGCAGCAGATCCTGCAGGATGATGAACGATGTGTTTCTCTGGGGATAGACGGAGACACAAAGGGTGTGTTATTTTACTGGACTGAAATGGCAGCTACTTTCTTCTGCACATGGACGATGCATGACTGCCAAGAGGTTTGGCACCCGCCCTGAAAGGCCTCCATTCAGAAGgatggaaaaccaaaaaaataaatgacgaAAAATGGATTTAAAGGCTTTAAAGTACTGtataaacagagagaagaggAACAAATTCAAATGCGGTCAGACCCAAACCACATGACAGAGACAGAAGCAGTGATCTGTGTATATGTTGGAGCAACTCTGTTCATCAGGAGACTCAAACAAAACTCAAATGTTGTTAACagtcttaaaataaacaaagaaaatgtagaATAGATGTTGTCCTGTAAATCCTGCCCTCGATTCTTTAAACCTTGTGAATCGTGTGACTTTGTTTTACCTTTAACTGTAAATCTGGTTTTCATTAATGGACTTTCAACCTTGAATAAAGTGTTTTGGATGACTCTCATGAAATCGAGAGAATAAGAACGGAA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251582.1 lncRNA upstream 25523 12547744 ~ 12570426 (+) False LOC122350247
XR_006251583.1 lncRNA upstream 25523 12547744 ~ 12570426 (+) False LOC122350247
XR_006251584.1 lncRNA upstream 35359 12547744 ~ 12560590 (+) False LOC122350247
XR_006251579.1 lncRNA upstream 41111 12547744 ~ 12554838 (+) False LOC122350247
XR_006251581.1 lncRNA upstream 41111 12547744 ~ 12554838 (+) False LOC122350247
TU94068 lncRNA downstream 27483 12640076 ~ 12640617 (+) True G63534
TU94076 lncRNA downstream 118462 12731055 ~ 12732041 (+) True G63538
TU94098 lncRNA downstream 202372 12814965 ~ 12892529 (+) True G63552
TU94274 lncRNA downstream 339995 12952588 ~ 12953461 (+) True G63665
TU94276 lncRNA downstream 376874 12989467 ~ 13048261 (+) True G63666
XM_043246840.1 mRNA upstream 3559 12588270 ~ 12592390 (+) False rhoab
XM_043246841.1 mRNA upstream 3559 12588372 ~ 12592390 (+) True rhoab
XM_043246839.1 mRNA upstream 3559 12590473 ~ 12592390 (+) False rhoab
XM_043246827.1 mRNA upstream 9363 12582950 ~ 12586586 (+) True tmem115
XM_043246394.1 mRNA upstream 54801 12522853 ~ 12541148 (+) True cacna1sb
XM_043246820.1 mRNA downstream 1385 12613978 ~ 12619607 (+) True borcs6
XM_043246793.1 mRNA downstream 28616 12641209 ~ 12649215 (+) True xpc
XM_043246814.1 mRNA downstream 37689 12650282 ~ 12658853 (+) True arih2
XM_043246812.1 mRNA downstream 47475 12660068 ~ 12670371 (+) False impdh2
XM_043246808.1 mRNA downstream 47477 12660070 ~ 12670371 (+) True impdh2
TU93955 other upstream 104025 12490260 ~ 12491924 (+) True G63453
TU93956 other upstream 104025 12490260 ~ 12491924 (+) False G63453
TU93957 other upstream 104025 12490260 ~ 12491924 (+) False G63453
TU93573 other upstream 535752 12057682 ~ 12060197 (+) False lamtor5
XR_006251578.1 other upstream 544981 12047509 ~ 12050968 (+) True LOC122350223
TU94067 other downstream 25637 12638230 ~ 12638565 (+) True G63533
TU94080 other downstream 132210 12744803 ~ 12747301 (+) False LOC122350405
XR_006251598.1 other downstream 209441 12822034 ~ 12829790 (+) False zgc:136971
TU94289 other downstream 394829 13007422 ~ 13008830 (+) True G63676
TU94492 other downstream 1070506 13683099 ~ 13684188 (+) False srxn1

Expression Profile