sema3h (sema3h,LOC107669646,LOC107591773,LOC107717498)


Basic Information

Item Value
gene id sema3h
gene name sema3h,LOC107669646,LOC107591773,LOC107717498
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 12595949 ~ 12612593 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043246801.1
cgagagaggggtGGGCACAATTGGGACAGTTCCCTCCTTCCCAGCAGGGGAGTGTTTGAAAGAAAGGAGTGAATGATAAGAGACGGctgaaggagaaggagagagatCAGAAAGAGTTAAAAGATGCAGAGGGCAAGACAATAAGAGAGTGAACAAAAACGAAGACAAATTCAGACAGCAATGTTATAAACACGGAAGACAGACCGAGGGAGGATTCTGCTGCACCGCTGACCTGAGCAGGATTACATTACACTGcactgcacacacacttacGCAGAGGTGCGTGATGCTGACATCAGGTGGACaccatttgtgtgtgttatatttttgaGCAGATCACTCagagagggagagtgtgtgtgtttacttcgAGCTAGAGTcgcatagtgtgtgtgtgtcagccaTGAGGAGGATGCTGGCTCTCTTCTGCTTAATTTCACTGGCAGCACCTCCAACGAACGCATGGAGACCATCACAACCACGACTGCACTTCCAGCACTCAGAGCTGGTGCGGAGCGGCAGGCTCATGTCTCTCTTGTTGCCTGCTGGGGATCTGAACTCTCTGCTGCCAGATGAAGATGGTCGTCGTCTATATATCGGCATGAAAAACCATCTGCTGTCCACCAGCTTGGATGATATTACTCAAACCCCCCGCAAGATATACTGGCCTGCAAGTCCGGATCGGATTCAGAACTGTATCATGGCTGGAAAAAACCAgcagACGGACTGTGGAAACTTCCTGCGTGTGTTAGAGCTGTATAACCAAACACATCTTTATGCCTGTGGGACTGGAGCGTTCAACCCTCGCTGTGCCTTCATCCCCACCAACCTCTTCCTCAGGGCTGAGGAACAAATGCTGCAGTATGAAGACACCGAATCCGGTAAGGGAAAATGTCCTTATGACCCTCACCAGAGAACAGCTACCGCCATCATAGATGGAGAGCTGTACGCTGGCATCTCATCTGACTTTCTAAGTCATGACACTGCTTTTATTCGGAGTCTGGGGGAGCGACATGCCATTCGCACTGAACAATATGACTCTACATGGCTGCAAGGCGCTGAATTTGTGCATGTTGCAGCGATGTCAGAGAGTGATAATGAGGAGGATGATAAGGTCTACGTGTTCTTTACTGAGCGCGCACAGGAAGCAGAGGGGGCTGTTGGGAAGGTCCTCTATTCTAGAGTCGCCCGCGTCTGCAAGaaTGATATTGGTGGTCAACGTAGTTTGGTTCATAAATGGAGCACCTTTCAGAAAACTCGTATTATTTGCTCCGTACCAGGACTCGATGGCATACAGACACACTTTGACAAACTCGAGGATATTTTCATTCAGCATGGGAAGGATAAAAAGAACCCCCTCATCTATGGGCTCTTCACCACTACCAGCAATGTCTTGAATGgatctgctgtgtgtgtttaccgCATGCAGGATATTATTAGAGCTTTTAAGGGAAATTTCCTTCATAGGGAGGGTCAACAGTACAAATGGACGGAATATACAGGCAGAGTTCCCTATCCTAGACCTGGCACATGTCCCAGCAGCACATATGGAGGGTTCAAATCAACAAGGGAATATCCTGATGAGGTCATCTTTTTTAGCCGGACGCATCCTTTAATGCAGGAAGTTGTACGTCCTCTTGGAGGTCATCCTTTGCTCATCAGAGTGGGCGTGCCCTATAAACTGACCCGCCTCCTTGTGGACAGAGTGGAGGCGGTGGATGGACAATATGACGTGCTGTTTATTGgtacagATTCGGGCTTGGTTCTGAAAGCTATTCACCTGCCAAAAGCCAACAGACAGAATCAGGAAATCACTCTGGAACAGCTTCAGGTTTTTAAGAACAAGTCACCAATCACTGCCATGACGCTATCCAAGAAAAAGCAGTGGCTGTTTGCTGGATCAGCAGAGGGTGTGGTTCAGTTGGGTCTGTTCCACTGTGATTTGTATGGCCAAGCCTGCGCTGAATGCTGTCTCGCTAGAGACCCATATTGCACCTGGGATGGCCACTCTTGCAGCCCTTACATGCCAAATGCACGCAGAAGAAATATTCGTCAGGTTAATGATGACGGCAACCCGCTGAACCAGTGTGTCAGACAAGGAGCTGGTCTTCAGGTGGACGCAGAGGAGAAGACACAAGTTGTTGCCTTGGGTAATAGCACATACCTGGAGTGTCTACCCAAATCTCACCATGCCACAGTCACCTGGTTTAAAGACATCGGCGATAACAGCTTGGAGCAGCATAAGGTCACATCTGGAGAGCAGCTGGTTGTCATTGACAGGGGCATCCTCATTCCCCGGGCTGAGCTCAATCACGGCGGCATTTATCATTGTCAGCTCGAAGAGCATGGATTCCGTTGGACAGCCGTCACCGTTCGTTTAATTGTGTGGAGCCCCACCCTGCACCCCACCCTTGTCTCCGCCCAGCCATGGTACCAAGATGTGATGGCACTGATCAACCATGGCAAACTGGAGCGACACTGCAAAGAACTCAGTCAGCGCCACAACAAGAAGGAATCAGGGAACCACAAGCATAACAAGcaggacagaaagagagcggACCGGCCCAGGCACAGAGGAGGGGGAGAGAAGGAGAAAGGAAAGGGGCGGAAGAACCGGAGCCGAATGCAGAGTTCAGCACAGAGGCTGCCGAGGAGCGCATAGACCCAATCACAGGTGTTTACAAAGCTGCTCGAAACAAAAGAATACGACAAAACAtgcaatatacagtatatacacagtacatatacacaGCATCATAACAGCAGACATTTGCTTTGTTTCAAAACCTACTGAGCTGCCTGCATGCAGGtttcaaaaaaatacatgcaagaTGGGGGATGACAAAAATTGTAGCActgtttcctcaaaaatattaatcagcacaGCTGATTTCATAAttgatagtaataataaatgttccttGATAACaccatatcagcatattagaatgatttatgaaggatcatgtgaagactggagtgcgttttagaaaatatatttaaatagaaaacgtatattttaggtattttactgcattttgattaactaaatgcagccttggtgatcaTAAGACATTATTTCTTACTGACCCTCAAACTTATTAACggtattataatttaaaacatattattttaccaTATATTTTGTCTATGTTAAGACATGCTAACTGAAAAATTCATTGCATGTCAAAAATATGTGTGTTATCCAGAATTGTAGAGTGTCAGATCTCCCAATGAGCTCAGTAACAAGTAGAATGCTGCCTATGTAGGCAGTGAGGCAGCTCACTGGGTTTTGAAACAAAGCTAGTATCTGAATCATATGAAGGATTGTCGCCAAGCATATTAAGAATGAACAGCTATAGGTGTGgtgaaaaagaagtgtttaCTTTAATATCAAAAACCAACTGATTATTTCAGGACTGTGTTAAGCACATTTGATAAATCTTTAAAAGCAAGGGAGTGTCCCCAAATTATCCTCTGTTGAATAAAAGATAAATCTTCCAAAGTTAGGGAGCatcttaaaatgttctttgtttaaaaagactTCAGTGTTGATGGCACTTTTTCATCTGTACTGAAATGCATTGCCTTATTTATCTTTCATGGTATTTATTTTccttgtgtttttgtgctttttttgtttatattgtcTTGCATTTTAAGTGTAAAAATTGTACAtggtattatttctttttagtttttaaatacagtgtaATTCTTTTTCTGATGTCACtcattaagacatttatttaaataaatgaacgaaAGAATAAGTCCCAAAATGCAGCAGATCCTGCAGGATGATGAACGATGTGTTTCTCTGGGGATAGACGGAGACACAAAGGGTGTGTTATTTTACTGGACTGAAATGGCAGCTACTTTCTTCTGCACATGGACGATGCATGACTGCCAAGAGGTTTGGCACCCGCCCTGAAAGGCCTCCATTCAGAAGgatggaaaaccaaaaaaataaatgacgaAAAATGGATTTAAAGGCTTTAAAGTACTGtataaacagagagaagaggAACAAATTCAAATGCGGTCAGACCCAAACCACATGACAGAGACAGAAGCAGTGATCTGTGTATATGTTGGAGCAACTCTGTTCATCAGGAGACTCAAACAAAACTCAAATGTTGTTAACagtcttaaaataaacaaagaaaatgtagaATAGATGTTGTCCTGTAAATCCTGCCCTCGATTCTTTAAACCTTGTGAATCGTGTGACTTTGTTTTACCTTTAACTGTAAATCTGGTTTTCATTAATGGACTTTCAACCTTGAATAAAGTGTTTTGGATGACTCTCATGAAATCGAGAGAATAAGAACGGAA
>XM_043246802.1
cgagagaggggtGGGCACAATTGGGACAGTTCCCTCCTTCCCAGCAGGGGAGTGTTTGAAAGAAAGGAGTGAATGATAAGAGACGGctgaaggagaaggagagagatCAGAAAGAGTTAAAAGATGCAGAGGGCAAGACAATAAGAGAGTGAACAAAAACGAAGACAAATTCAGACAGCAATGTTATAAACACGGAAGACAGACCGAGGGAGGATTCTGCTGCACCGCTGACCTGAGCAGGATTACATTACACTGcactgcacacacacttacGCAGAGGTGCGTGATGCTGACATCAGGTGGACaccatttgtgtgtgttatatttttgaGCAGATCACTCagagagggagagtgtgtgtgtttacttcgAGCTAGAGTcgcatagtgtgtgtgtgtcagccaTGAGGAGGATGCTGGCTCTCTTCTGCTTAATTTCACTGGCAGCACCTCCAACGAACGCATGGAGACCATCACAACCACGACTGCACTTCCAGCACTCAGAGCTGGTGCGGAGCGGCAGGCTCATGTCTCTCTTGTTGCCTGCTGGGGATCTGAACTCTCTGCTGCCAGATGAAGATGGTCGTCGTCTATATATCGGCATGAAAAACCATCTGCTGTCCACCAGCTTGGATGATATTACTCAAACCCCCCGCAAGATATACTGGCCTGCAAGTCCGGATCGGATTCAGAACTGTATCATGGCTGGAAAAAACCAgcagACGGACTGTGGAAACTTCCTGCGTGTGTTAGAGCTGTATAACCAAACACATCTTTATGCCTGTGGGACTGGAGCGTTCAACCCTCGCTGTGCCTTCATCCCCACCAACCTCTTCCTCAGGGCTGAGGAACAAATGCTGCAGTATGAAGACACCGAATCCGGTAAGGGAAAATGTCCTTATGACCCTCACCAGAGAACAGCTACCGCCATCATAGATGGAGAGCTGTACGCTGGCATCTCATCTGACTTTCTAAGTCATGACACTGCTTTTATTCGGAGTCTGGGGGAGCGACATGCCATTCGCACTGAACAATATGACTCTACATGGCTGCAAGGCGCTGAATTTGTGCATGTTGCAGCGATGTCAGAGAGTGATAATGAGGAGGATGATAAGGTCTACGTGTTCTTTACTGAGCGCGCACAGGAAGCAGAGGGGGCTGTTGGGAAGGTCCTCTATTCTAGAGTCGCCCGCGTCTGCAAGaaTGATATTGGTGGTCAACGTAGTTTGGTTCATAAATGGAGCACCTTTCAGAAAACTCGTATTATTTGCTCCGTACCAGGACTCGATGGCATACAGACACACTTTGACAAACTCGAGGATATTTTCATTCAGCATGGGAAGGATAAAAAGAACCCCCTCATCTATGGGCTCTTCACCACTACCAGCAATGTCTTGAATGgatctgctgtgtgtgtttaccgCATGCAGGATATTATTAGAGCTTTTAAGGGAAATTTCCTTCATAGGGAGGGTCAACAGTACAAATGGACGGAATATACAGGCAGAGTTCCCTATCCTAGACCTGGCACATGTCCCAGCAGCACATATGGAGGGTTCAAATCAACAAGGGAATATCCTGATGAGGTCATCTTTTTTAGCCGGACGCATCCTTTAATGCAGGAAGTTGTACGTCCTCTTGGAGGTCATCCTTTGCTCATCAGAGTGGGCGTGCCCTATAAACTGACCCGCCTCCTTGTGGACAGAGTGGAGGCGGTGGATGGACAATATGACGTGCTGTTTATTGgtacagATTCGGGCTTGGTTCTGAAAGCTATTCACCTGCCAAAAGCCAACAGACAGAATCAGGAAATCACTCTGGAACAGCTTCAGGTTTTTAAGAACAAGTCACCAATCACTGCCATGACGCTATCCAAGAAAAAGTGGCTGTTTGCTGGATCAGCAGAGGGTGTGGTTCAGTTGGGTCTGTTCCACTGTGATTTGTATGGCCAAGCCTGCGCTGAATGCTGTCTCGCTAGAGACCCATATTGCACCTGGGATGGCCACTCTTGCAGCCCTTACATGCCAAATGCACGCAGAAGAAATATTCGTCAGGTTAATGATGACGGCAACCCGCTGAACCAGTGTGTCAGACAAGGAGCTGGTCTTCAGGTGGACGCAGAGGAGAAGACACAAGTTGTTGCCTTGGGTAATAGCACATACCTGGAGTGTCTACCCAAATCTCACCATGCCACAGTCACCTGGTTTAAAGACATCGGCGATAACAGCTTGGAGCAGCATAAGGTCACATCTGGAGAGCAGCTGGTTGTCATTGACAGGGGCATCCTCATTCCCCGGGCTGAGCTCAATCACGGCGGCATTTATCATTGTCAGCTCGAAGAGCATGGATTCCGTTGGACAGCCGTCACCGTTCGTTTAATTGTGTGGAGCCCCACCCTGCACCCCACCCTTGTCTCCGCCCAGCCATGGTACCAAGATGTGATGGCACTGATCAACCATGGCAAACTGGAGCGACACTGCAAAGAACTCAGTCAGCGCCACAACAAGAAGGAATCAGGGAACCACAAGCATAACAAGcaggacagaaagagagcggACCGGCCCAGGCACAGAGGAGGGGGAGAGAAGGAGAAAGGAAAGGGGCGGAAGAACCGGAGCCGAATGCAGAGTTCAGCACAGAGGCTGCCGAGGAGCGCATAGACCCAATCACAGGTGTTTACAAAGCTGCTCGAAACAAAAGAATACGACAAAACAtgcaatatacagtatatacacagtacatatacacaGCATCATAACAGCAGACATTTGCTTTGTTTCAAAACCTACTGAGCTGCCTGCATGCAGGtttcaaaaaaatacatgcaagaTGGGGGATGACAAAAATTGTAGCActgtttcctcaaaaatattaatcagcacaGCTGATTTCATAAttgatagtaataataaatgttccttGATAACaccatatcagcatattagaatgatttatgaaggatcatgtgaagactggagtgcgttttagaaaatatatttaaatagaaaacgtatattttaggtattttactgcattttgattaactaaatgcagccttggtgatcaTAAGACATTATTTCTTACTGACCCTCAAACTTATTAACggtattataatttaaaacatattattttaccaTATATTTTGTCTATGTTAAGACATGCTAACTGAAAAATTCATTGCATGTCAAAAATATGTGTGTTATCCAGAATTGTAGAGTGTCAGATCTCCCAATGAGCTCAGTAACAAGTAGAATGCTGCCTATGTAGGCAGTGAGGCAGCTCACTGGGTTTTGAAACAAAGCTAGTATCTGAATCATATGAAGGATTGTCGCCAAGCATATTAAGAATGAACAGCTATAGGTGTGgtgaaaaagaagtgtttaCTTTAATATCAAAAACCAACTGATTATTTCAGGACTGTGTTAAGCACATTTGATAAATCTTTAAAAGCAAGGGAGTGTCCCCAAATTATCCTCTGTTGAATAAAAGATAAATCTTCCAAAGTTAGGGAGCatcttaaaatgttctttgtttaaaaagactTCAGTGTTGATGGCACTTTTTCATCTGTACTGAAATGCATTGCCTTATTTATCTTTCATGGTATTTATTTTccttgtgtttttgtgctttttttgtttatattgtcTTGCATTTTAAGTGTAAAAATTGTACAtggtattatttctttttagtttttaaatacagtgtaATTCTTTTTCTGATGTCACtcattaagacatttatttaaataaatgaacgaaAGAATAAGTCCCAAAATGCAGCAGATCCTGCAGGATGATGAACGATGTGTTTCTCTGGGGATAGACGGAGACACAAAGGGTGTGTTATTTTACTGGACTGAAATGGCAGCTACTTTCTTCTGCACATGGACGATGCATGACTGCCAAGAGGTTTGGCACCCGCCCTGAAAGGCCTCCATTCAGAAGgatggaaaaccaaaaaaataaatgacgaAAAATGGATTTAAAGGCTTTAAAGTACTGtataaacagagagaagaggAACAAATTCAAATGCGGTCAGACCCAAACCACATGACAGAGACAGAAGCAGTGATCTGTGTATATGTTGGAGCAACTCTGTTCATCAGGAGACTCAAACAAAACTCAAATGTTGTTAACagtcttaaaataaacaaagaaaatgtagaATAGATGTTGTCCTGTAAATCCTGCCCTCGATTCTTTAAACCTTGTGAATCGTGTGACTTTGTTTTACCTTTAACTGTAAATCTGGTTTTCATTAATGGACTTTCAACCTTGAATAAAGTGTTTTGGATGACTCTCATGAAATCGAGAGAATAAGAACGGAA

Function

symbol description
sema3h Enables neuropilin binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and positive regulation of neuron migration. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Is expressed in several structures, including adaxial cell; brain; pectoral fin; pharyngeal arch 3-7 skeleton; and pronephric duct.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043246801.1 True 4338 mRNA 0.44 17 12595949 12612593
XM_043246802.1 False 4335 mRNA 0.44 17 12595949 12612593

Neighbor

gene id symbol gene type direction distance location
rhoab rhoab,LOC107591788,LOC107679616,LOC107556503,LOC108265880,LOC108425062 coding upstream 3559 12588270 ~ 12592390 (+)
tmem115 tmem115,LOC107711974,LOC107679556,LOC107669665,LOC107550514,LOC107591784 coding upstream 9363 12582950 ~ 12586586 (+)
cacna1sb cacna1sb,LOC107669632,LOC107707674,LOC107679379,LOC107591792,LOC107550462 coding upstream 54801 12522853 ~ 12541148 (+)
tmem9 tmem9,LOC107707676,LOC107669678,LOC107711977,LOC107679355 coding upstream 73366 12518002 ~ 12522583 (+)
si:ch211-167b20.8 LOC107669633 coding upstream 84194 12503114 ~ 12511755 (+)
borcs6 LOC107717508,LOC107669648,LOC107556497,LOC107711970,LOC107679501,LOC107591781 coding downstream 1385 12613978 ~ 12619607 (+)
xpc xpc coding downstream 28616 12641209 ~ 12649215 (+)
arih2 arih2,LOC107669654,LOC107556492,LOC107679480,LOC107717512,LOC107591779,LOC107711917 coding downstream 37689 12650282 ~ 12658853 (+)
impdh2 impdh2,LOC102785462,LOC107669669,LOC107717516,LOC107711965 coding downstream 47475 12660068 ~ 12670371 (+)
dalrd3 dalrd3,LOC107669664,LOC107717515,LOC107711963,LOC107591775 coding downstream 61019 12673612 ~ 12680375 (+)
LOC122350247 NA non-coding upstream 25523 12547744 ~ 12570426 (+)
G63218 NA non-coding upstream 268011 12240641 ~ 12327938 (+)
G63204 NA non-coding upstream 406470 12180187 ~ 12189479 (+)
G63207 NA non-coding upstream 456539 12131897 ~ 12139410 (+)
G63195 NA non-coding upstream 540702 12055042 ~ 12055247 (+)
G63534 NA non-coding downstream 27483 12640076 ~ 12640617 (+)
G63538 NA non-coding downstream 118462 12731055 ~ 12732041 (+)
G63552 LOC107556489,LOC107717529,LOC107591772,LOC107711952 non-coding downstream 202372 12814965 ~ 12892529 (+)
G63665 kazna,LOC107711950,LOC107591771,LOC107669642,LOC107680131,LOC107717500,LOC107556484 non-coding downstream 339995 12952588 ~ 12953461 (+)
G63666 NA non-coding downstream 376874 12989467 ~ 13048261 (+)
G63453 NA other upstream 104025 12490260 ~ 12491924 (+)
lamtor5 lamtor5,xip,LOC107668015,LOC106566397 other upstream 535752 12057657 ~ 12060197 (+)
LOC122350223 NA other upstream 544981 12047509 ~ 12050968 (+)
si:ch211-163l21.10 LOC107731153,LOC107549947,LOC107668018,LOC107745734 other upstream 738528 11853594 ~ 11857421 (+)
fance LOC107731142,LOC107668098,LOC107549969,LOC107678824,LOC107745739,LOC107591838,LOC107577385 other upstream 775290 11817057 ~ 11820659 (+)
G63533 NA other downstream 25637 12638230 ~ 12638565 (+)
LOC122350405 LOC107556500,LOC107717521,LOC107669623,LOC107679608,LOC107591846 other downstream 131585 12744178 ~ 12747558 (+)
zgc:136971 zgc:136971,LOC107717528,LOC107669673,LOC107556470 other downstream 209441 12822034 ~ 12833000 (+)
G63676 NA other downstream 394829 13007422 ~ 13008830 (+)
kcnd3 kcnd3,LOC107711847,LOC107556323,LOC107594524,LOC107679777,LOC107669639 other downstream 827682 13440275 ~ 13522536 (+)

Expression


Co-expression Network