RNA id: XM_043246868.1


Basic Information

Item Value
RNA id XM_043246868.1
length 2169
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC122350422
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 810039 ~ 820685 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tagaatgatggatggatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagattcttttttgcataacaaaaaactgttttcttcTCACGTGAGAACCGAAGTGGACGTGCCTGTCATTTCCAGATTTTCATCACTTCACTATTGATCTGAAATACGGAAATATTCCTAAAGAATATCTTTGTCCAAACGTTTGCTGTTATTAGGCGTCATGTACGGCTCACAATTATACATCACTACGGCAGAAATCATTAGGATACtgagtaaagatcatgttccatgaagatgttttgtacatttgcCACAAACTTCATCTCTGATCAGTAATATTCATCActgagaacttcatttgaacaactttaaaggtgatttctcaatatttagattgtttcgtctccctcagattccaggtTTTCTAacagttgtatctcagacaCAGATACGGTCCGATcagacatcaatggaaagagGTTTTTTTCTATCATTATTGACTGTTCATTGATCCGTGGAGATGTTTTTGATCCTCTCTGGAGCACAGTGTGGTTTGTTTGGCTGAAGTCCTGCGTCGGTCAGCACAGCGCTCCCATCACTGATTAACTCGGAGCTGATCTCGGGTCAGAAGCAGACGATCAGGGTCGTCCCGATGGAGAAACTCCTGCTTTCTGAGGACTCTCTTCAGAGCGGGAGCAGACCGATGTGCTCCGTTCCTCCGCGTCAGCAGGCCGACGAGTCTCTGCGTCAGCATGCAGAAAACACCGAGGAGGACGACGGACAGAAGATGACTCTGATCTCGCCGGACGCCGAGACTGACCTGAGGAGAAGAAAGCCCGCTCTGGTCAGATCCAGAACCTTCGACCCGGCGCTTCTGCTGCAAGTCCAGAGTGACTCCGAATCCAAGTGTGAACGCAGAAAACCTCAGTCCGCTCAGtCTCTGCGCACTAATATCCAGTACCACAAGGTTTTTAAAGACATAGGTGAAGAAGAGCAGCTGAGACAGAGTTACACCTGCGCCCTGCAGAAGGACATCCTGTATCAGGGAAGACTGTTTGTGTCTGATAACTGGATCTGTTTCCATTCCAAAGTGTTCGGAAAAGACACGAAGATTGTGATTCCAGTGGCTTCAGTGACGATCATCAAGAAAACCAAAACGGCCATCTTGGTGCCGAACGCTCTGGTCATCTCCACGGCGCGCGAGCGGCATGTGTTCGTCTCGTTTCTGTCTCGAGACGCGACCTACAAGGTCCTGATGTCCGTCTGCCCTCATCTGTTTGAGAAGAGTCCCGGGGTCAGTCAGATCCCGTCTCAGAGTCTCAGGCGACATCCGGCGTCTCTGACCGCGGATTTCTCTGCGGATCTGTCGGATCTGGACGCTCCGGTCAGCCAGGCGGGTCAGCACATGGACGACAGCAGCAGCTCCGACTGCCCCGAGTCTCCGGACTTCATCAAAACCcccaAGTTCACAAAACGGCCCCAAGCTTGTATTGAAGTGACTGAAAGAAATGAGGAACTGGATTCTCACACACAAGAAACCAGCGCCGCTGTCAACATACctgtGTCTTCAGGGTCAGTGGAGGTGATGAAGCGTCTCAGTCCGGTGTCTCTGTCTCTGAACTCTCTGCTGGTGATCTATGTGTCTCTGGTCTGCGTTCTTCTGGTTTCCTCCTGCGTCATGGCGCTGAAGATCATGTCTCTTGAGGAGCGTCTGACATCTCTCGTTTCCATGGAGATTCCCCACAAAAGAGATGAGTATCAAAGCCTGTTTGCTGGAGACACGGCTGAGATCTTCTCGGTTCTGTCCGCGAGTCTCCTGAAGCTGGAAAAGATTCACAGGAACCTGCAGAGACTGATGGAGAACGCGTCCGAGCTTTAAGGTACTTCCCTCGGAGGAAACGCCACGGAGACGACGGCCGTTCCGGTCAATATCGCAATGTTTTAAGCTTTTGAATGCAAGTACTGTGAAAAAAAGACCATCATGGGTAGAACTAGTTCTCATTTGCTGTTTTATACAAGCGTTCAATCAAATACAAGCTGAGCCAGTGCTTTTAGATGCATGTGTAAAATGAAAGGATCTTTTGTGTTGAGCAGACTCTGAATCGTGAATGAAAAACTGTGTACTGAATAAAGTTTGCGTCGAGTGAA

Function

GO:

id name namespace
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0005579 membrane attack complex cellular_component
GO:0046930 pore complex cellular_component

KEGG:

id description
ko00770 Pantothenate and CoA biosynthesis
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease
ko04950 Maturity onset diabetes of the young

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88410 lncRNA upstream 43411 755335 ~ 766628 (+) True G59801
TU88345 lncRNA upstream 83034 626849 ~ 727005 (+) True G59762
TU88337 lncRNA upstream 165471 567295 ~ 644568 (+) True G59756
TU88462 lncRNA downstream 53203 873888 ~ 874199 (+) True G59815
TU88457 lncRNA downstream 126992 947677 ~ 950973 (+) True G59811
TU88474 lncRNA downstream 136538 957223 ~ 958231 (+) True G59825
TU88472 lncRNA downstream 137994 958679 ~ 960171 (+) True G59824
TU88461 lncRNA downstream 152801 973486 ~ 976706 (+) True G59814
XM_043246285.1 mRNA upstream 8294 789181 ~ 801745 (+) True LOC122350088
XM_043246286.1 mRNA upstream 8294 789181 ~ 801745 (+) False LOC122350088
XM_043246287.1 mRNA upstream 8294 789181 ~ 801745 (+) False LOC122350088
XM_043247782.1 mRNA upstream 21381 786439 ~ 788658 (+) True zgc:101664
XM_043247784.1 mRNA upstream 25938 781824 ~ 784101 (+) True LOC122350985
XM_043246865.1 mRNA downstream 1674 822359 ~ 841932 (+) True LOC122350421
XM_043246866.1 mRNA downstream 1674 822359 ~ 841932 (+) False LOC122350421
XM_043246867.1 mRNA downstream 1674 822359 ~ 841932 (+) False LOC122350421
XM_043246863.1 mRNA downstream 21392 842077 ~ 852004 (+) False znf608
XM_043246864.1 mRNA downstream 21392 842077 ~ 852004 (+) False znf608
TU88420 other upstream 5200 803653 ~ 804839 (+) True G59807
TU88285 other upstream 269973 537794 ~ 540066 (+) False cdc14b
XR_006251599.1 other downstream 21392 842077 ~ 852004 (+) True znf608
TU89150 other downstream 1094775 1915460 ~ 1918371 (+) True G60259
TU89212 other downstream 1194195 2014880 ~ 2017520 (+) False polb
TU89216 other downstream 1210193 2030878 ~ 2033063 (+) False LOC122350053
TU89217 other downstream 1213207 2033892 ~ 2035980 (+) True LOC122350053

Expression Profile