RNA id: XM_022677841.1


Basic Information

Item Value
RNA id XM_022677841.1
length 2725
RNA type mRNA
GC content 0.52
exon number 5
gene id LOC103031087
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3722737 ~ 3759982 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCATCGAAGGGGTCGTAAAGGCGGCGGTGGTTCAGAGGAGTGTGGAGATTAGATTGGTGTGTTCGAGCGGAGCGAGAGAGTGAACTCGGATTAAACAcaaacagaggaagaaagagagggaagagaaCCGCGGAGGAGCAAATactacaggagagagagagaaaaaaagagagagagagagagaaaatgagaatgtGTTGTTCGGGCTGACAGACCGCTGGAGTTTACTCAGTTCTTCTCGCTGTTTTTGGATTCTATTCTGGAAGAATCGCTAACGCAGTGCACTTCAGAATCACGCTCTGCTACGCTACGCTAAGCTGCTCCAGTGATTAGCGGTCTGCCCGGCCGACCTAAGGTGATTCTGACCCCTAGGAAGGAAAGTTGATGCAAAAACTTGAATTAAATCTCGGGAGTCTTGGCCTCAATCATGGGGACAGTGGTTCCTGAGCCGGACGACACTGACCGACAGCTTCACTCTCAGCATGGATTGCTGCTCTAGTTGACCCAATCGCTAATCACGATGAAGCAGATAACAAGGATGAGACGGTGGCATTGAGGAAGACCGAAGCGTGCTGATCATCCTTGTGTCACAGCGTGTCAGCAGCATGTTGCGCTTAGTTTCGCTGAAGTTTGCCCGCGTCTACCGGTGCGGAAAGTTCCTGTTCCTGGTGGCCCTGTTCATCATCCTGCTCATGAACACCCACAACCTCTTAGCCTCCTTTCAGAGGAACGAGCTCGTGGACCGACGCTTCATCGGCCTTAACAAGTGCCCGGCCTGTTTTGGGACCAGCTGGTGCCGCAAGTTCATGAACGGTCAGGTCACGTTTGAGACCTGGGGGCGGCTGCGCTTCCTGGACTTCTTCAACGTGAAAAACGTCTACTTCGCACAGTACGGAGAGCCGCGGGAGGGCACGCGGCGGGTGGTGCTCAAACGCCTCGGCTCCAACCAGGAACTTGCAGAGATTGATCAGAAGATATGCAAAAGAGCTACAGGAAGGCCTCGCTGTGACCTCATTCAGGGCATGTACAAAACCGAGTTCGCTCGACTCAACGGCGACGTACGGTTGCTAACTCCGGAGGTGGTGGAGGGCTGGTCGGACCTGGTGCACTGCCCCTCCCAGAGACTTCTGGACAGGGTGGTTAGGAGGTACGCCGAGACCAAGGACTCTGGAAGCTTCCTTTTGAAGAACCTGAAGGACACTGAGAGGATGCAGCTACTGATGACGTTGGCGTTTAACCCCGAGCCTCTGGTGCTGCAGAGCTTCCCCTCAGACGAGGGCTGGCCGTTTGCGAAGTACCTGGGTGCGTGCGGGCGCATGGTGGCGGTGAACTATGTTGGTGAGGAGCTGTGGAGCTTCTATAACGCACCGTGGGAGAAGAGAGTGGATCTGGCCAAGCAGCTGATGGACATCGCCGAGCAGCTCACCAACAACGACTTCGACTTCGCCCTGTACCTGCTGGACGTCAGCTTCGATAACTTCGCCGTGGGGCCTCGAGACGGGAAGGTGATCGTGGTGGACGCGGAGAACGTCATCGTGGCGGATAAGAGGCTGATAAAGCAGAATAAGCCGGAGAACTACGACGCCTGGTACGAGAGCCGATCGGAGGAGTGCGACAAGGAGGCCTGcctgtctttctccaaggacaTCCTGTGCTCGCGGGTCACCGTGGACCACAACTATTACGCCATCTGCCAGAACTTGCTGTCGCGCTTCGCTACGTGGCGCGGCACCACCGGGGGGCTCCTCCACGACCCGCCCGCCGACATGACGAGAGACGGGCGTCTCGTCTCGCTGCTGGACGAGTGCACCAGGCCTCAGAAGCGCTACGGTCGCTTCCAGGCAGCTAAGGAACTGCGGGAGTATCTCACGCAGCTGACAGAgcagctagctaatgctagcaggtAGTACATGCTAAAGGAGGGAAAGTAGGGGGCGCTGGACTTCCCTTCTTTTCCtgctttcaaacacagactCGTCCCTGTCGGACTCGGCTTTGTAAAGTGACAGCAGGCAGTGGAACATCCTATTAggataaaaagaaaaggaaatgtTGAGTTTGTTGCCGACCGGACGCTTCTAGCTTTGAACGAGGCCGAGCTCGAGGCTAATTAAAGTTAGAGTTTTTGCACATGGGCTCGGATGAGAGGCCTGGACAAAGACTGAAAGCAAGACTGGGAAACTGTATGTgcgagtgtgtaagtgtgtgtgtgcgtgtatatatgcgtgtgtgtgtctatgaTGCTGTTGAGCCGATGCTAATGTGGAAGCCTTGTTAGCAGTAATGGGCGTGTGATACGAGTGGGCTTCAGTCAGCCTCGTCTGGGCTCTGATCAGGATCCTCTAATgaggtttatgtttaatttatagAGCCCTGTGCGGTGGAGCGACCCCAAAGCAGCAGCCCATGTTCACAAGTGACACGTggaacttttattattattattaattattattattattatattattattattgttattattgttactattattataatttttcccAGTCGTTATTGTGAGATCTGTTATTTCCTTtgtaggcaaaaaaaaaaaagaaaagaaaagagaaacatCGTTGGGCATTGAAAGTGTTGCTCATCTTCATTCGGAAGAATTGAATATATTTAATCAGTTATAAACAAAGATTCAGCTTAAAAGGAACCCTGGTCACGATTGGAGACGGTTGAATGTTGGGTCTCGTGGacgtataaaagtataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187655 lncRNA downstream 58729 3663776 ~ 3664008 (-) True G138662
TU187652 lncRNA downstream 106723 3615793 ~ 3616014 (-) True G138659
TU187650 lncRNA downstream 123227 3599263 ~ 3599510 (-) True G138657
TU187640 lncRNA downstream 124140 3585184 ~ 3598597 (-) True G138651
TU187635 lncRNA downstream 154083 3541720 ~ 3568654 (-) False G138650
TU187728 lncRNA upstream 70685 3830667 ~ 3831292 (-) True G138706
TU187739 lncRNA upstream 81417 3841399 ~ 3841780 (-) True G138716
TU187834 lncRNA upstream 180654 3940636 ~ 3942474 (-) True G138794
TU187864 lncRNA upstream 290185 4050167 ~ 4051231 (-) True G138815
TU187866 lncRNA upstream 315518 4075500 ~ 4077466 (-) True G138817
XM_022677835.1 mRNA downstream 187332 3504576 ~ 3535405 (-) False usp33
XM_022677834.1 mRNA downstream 187333 3504576 ~ 3535404 (-) False usp33
XM_022677836.1 mRNA downstream 187776 3504576 ~ 3534961 (-) True usp33
XM_007250669.3 mRNA downstream 218915 3479968 ~ 3503822 (-) True zzz3
XM_007250667.2 mRNA downstream 306428 3381575 ~ 3416309 (-) True pigk
XM_007250677.3 mRNA upstream 33346 3793328 ~ 3796794 (-) True LOC103031615
XM_022677842.1 mRNA upstream 87740 3847722 ~ 3861356 (-) True LOC103047802
XM_022677695.1 mRNA upstream 214828 3974810 ~ 3990263 (-) True LOC103032259
XM_015606174.2 mRNA upstream 242843 4002825 ~ 4016139 (-) True LOC103021848
XM_007250682.3 mRNA upstream 308796 4068778 ~ 4074278 (-) True eif4a2
XR_002651005.1 other downstream 659978 3050400 ~ 3062759 (-) True LOC103045355
TU187245 other downstream 1235986 2478781 ~ 2486751 (-) False LOC103042176
TU186973 other downstream 2621244 1050532 ~ 1101493 (-) True G138199
TU186914 other downstream 3015789 695903 ~ 706948 (-) False LOC111194217
TU187730 other upstream 72739 3832721 ~ 3833670 (-) True G138708
TU187750 other upstream 88018 3848000 ~ 3851682 (-) False LOC103047802
TU188022 other upstream 571668 4331650 ~ 4335889 (-) False LOC103034146
XR_002651007.1 other upstream 573151 4333133 ~ 4338197 (-) False LOC103034146
TU188021 other upstream 576009 4335991 ~ 4338094 (-) False LOC103034146

Expression Profile