Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_022677883.1 |
| length | 2195 |
| RNA type | mRNA |
| GC content | 0.55 |
| exon number | 11 |
| gene id | LOC103027706 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035912.1 |
| NCBI id | CM008315.1 |
| chromosome length | 41032606 |
| location | 5031419 ~ 5045009 (-) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0003342 | proepicardium development | biological_process |
| GO:0021556 | central nervous system formation | biological_process |
| GO:0003140 | determination of left/right asymmetry in lateral mesoderm | biological_process |
| GO:0003146 | heart jogging | biological_process |
| GO:0046588 | negative regulation of calcium-dependent cell-cell adhesion | biological_process |
| GO:0042475 | odontogenesis of dentin-containing tooth | biological_process |
| GO:0051216 | cartilage development | biological_process |
| GO:0048264 | determination of ventral identity | biological_process |
| GO:0030510 | regulation of BMP signaling pathway | biological_process |
| GO:0051260 | protein homooligomerization | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0003230 | cardiac atrium development | biological_process |
| GO:0009952 | anterior/posterior pattern specification | biological_process |
| GO:0035124 | embryonic caudal fin morphogenesis | biological_process |
| GO:0048332 | mesoderm morphogenesis | biological_process |
| GO:0001889 | liver development | biological_process |
| GO:0035162 | embryonic hemopoiesis | biological_process |
| GO:0060030 | dorsal convergence | biological_process |
| GO:0001944 | vasculature development | biological_process |
| GO:0001947 | heart looping | biological_process |
| GO:0035462 | determination of left/right asymmetry in diencephalon | biological_process |
| GO:0005938 | cell cortex | cellular_component |
| GO:0070724 | BMP receptor complex | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0005024 | transforming growth factor beta-activated receptor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU188219 | lncRNA | downstream | 2714 | 5027920 ~ 5028705 (-) | True | G139040 |
| TU188222 | lncRNA | downstream | 25128 | 5005492 ~ 5006291 (-) | True | G139043 |
| TU188177 | lncRNA | downstream | 176727 | 4838866 ~ 4854692 (-) | True | G139003 |
| TU188203 | lncRNA | downstream | 193346 | 4821203 ~ 4838073 (-) | True | G139027 |
| TU188265 | lncRNA | upstream | 164178 | 5209187 ~ 5276039 (-) | True | G139073 |
| TU188308 | lncRNA | upstream | 273565 | 5318574 ~ 5318816 (-) | True | G139098 |
| TU188318 | lncRNA | upstream | 297472 | 5342481 ~ 5342814 (-) | True | G139108 |
| TU188320 | lncRNA | upstream | 299820 | 5344829 ~ 5346034 (-) | True | G139110 |
| TU188362 | lncRNA | upstream | 396777 | 5441786 ~ 5442427 (-) | True | G139149 |
| XM_022677874.1 | mRNA | downstream | 225752 | 4771793 ~ 4805667 (-) | True | LOC103027391 |
| XM_007250705.3 | mRNA | downstream | 264126 | 4761753 ~ 4767293 (-) | True | LOC103039917 |
| XM_022677871.1 | mRNA | downstream | 282668 | 4738988 ~ 4748751 (-) | True | LOC103039099 |
| XM_022677888.1 | mRNA | upstream | 522175 | 5567184 ~ 5598775 (-) | False | ccdc24 |
| XM_022677889.1 | mRNA | upstream | 522175 | 5567184 ~ 5596954 (-) | True | ccdc24 |
| XM_007229297.3 | mRNA | upstream | 579850 | 5624859 ~ 5898800 (-) | True | b4galt2 |
| XM_022677908.1 | mRNA | upstream | 932258 | 5977267 ~ 5997977 (-) | True | LOC103034342 |
| XM_022677909.1 | mRNA | upstream | 932258 | 5977267 ~ 5981249 (-) | False | LOC103034342 |
| XR_002651007.1 | other | downstream | 693222 | 4333133 ~ 4338197 (-) | False | LOC103034146 |
| TU188021 | other | downstream | 693325 | 4335991 ~ 4338094 (-) | False | LOC103034146 |
| TU188022 | other | downstream | 695530 | 4331650 ~ 4335889 (-) | False | LOC103034146 |
| TU187750 | other | downstream | 1179737 | 3848000 ~ 3851682 (-) | False | LOC103047802 |
| TU187730 | other | downstream | 1197749 | 3832721 ~ 3833670 (-) | True | G138708 |
| TU188266 | other | upstream | 231097 | 5276106 ~ 5276468 (-) | True | G139074 |
| TU188315 | other | upstream | 285069 | 5330078 ~ 5330805 (-) | True | G139105 |
| TU188844 | other | upstream | 964044 | 6009053 ~ 6010867 (-) | True | G139489 |
| XR_002651012.1 | other | upstream | 977600 | 6022609 ~ 6054339 (-) | False | LOC111194281 |
| XR_002651013.1 | other | upstream | 1075110 | 6120119 ~ 6124125 (-) | True | LOC103026010 |
