RNA id: XM_022677908.1


Basic Information

Item Value
RNA id XM_022677908.1
length 2527
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC103034342
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 5977267 ~ 5997977 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACACAGCAGCAGACTGTTGGAGGTTAAGGTGCATTCAGGGCTGTTTATTGTATTGGATCAGATCAAGTAACAGAGTCATTGTGATGTATTGATTGGAcatgttctaatagtttcaGCGCTTTGGACAGTTTTGCTGTGGTTTAAAATGAAGACTGTATTCTCTGTAGGTGAATATGGAAGGGGGGTTAGAGTTTCCCCCGGTCTCCAGTAAAgtggagcagcagaagatccagctctgatcagcagctccacacctctGTACTCAGACTGCTCTGCTGGAGGAACACCATCAGCTCACCTGCTGCAGAACTGAATGCTGTCCTGTTCCAAGTTTTCTCCCAGTGGCAACTTTCCTACTTGAAGTTTGGCTTCAGAAAAAACAGATTTCCCAAAGACGTTAAGCTGCTAAACTGCTAAAGAAAAGAACATGGCATCCAAAGAAATCTCCAATACTCAGCAAACGCTTGCTCCTACACCTCCCAggcaaatgcagaaaagtacagaCAAGAAGAAAACTCACCcatgctcagactgtgggaagagtttcacTACACAGAGAGATCTCAGAGCACACCAGCGcactcacactggagagaaaccgtatcactgctctgAATGTATGAAGAGTTTTACTTctcagagtaatctcaaaacacaccagcgcattcacactggagaaaaaccatatcactgctcagactgtgggaagagttttattaaAGAGAGAGATCTCAAAACACACGAAcgcattcacaccggagagaaaccgtataattgctcagaatgtgggaagagctttacacaacagagtaatctcaaaacacaccagcgaattcacacaggagagaaaccctttcactgttcagagtgtGAAAAGACTTTTACTACACACGATAGCCTCAGAATACACCAGCGtcttcacactggagagaaaccgtatcactgtttaGAGTGTGGGAAAATGTTTATTAGAAAGAGTCATTTTAAGACACACCAGTTCATTCACACAGGGGGGAAACCGTGCCAGTGCTCAGAATGTGGAATGAGTTTTAATTATCTAAATAGTCTCCTGCAacaccaacgcattcacactggagagaaaccatatcactgttcAGATTGTGGGATGGGTTTTAGTCAACTGAGTAATCTTAATAGACAccggcgcattcacactggagaaaaaccttATTATTGTCCGGACTGTGgcaagagttttaatcaacagattaATTTCCaaagacaccagcgcattcacagtGGAGtgaaaccgtatcagtgttcagactgtgggaagagttttaaccAACAGAATaatctccaacaacaccagcgcattcacactgcagagaaaccgtttcactgctcagaatgtggaaagagttttaattcTCAGAGAAGTCTTcgaacacacatatacattcacactggagagaaaccatatcactgctcagagtgtgcaGAGAGCTTCAGGTATTTACAATCATTCAATAAACACAAGTGCATTACGAACAGTTATGGAAATGGACAGTGACACACAAAACCATTCCAGGTCCCAACCCTGATCTATTGGTAACTTGTGTATACAGTTTCTGAAgcatattgatttttaaaacaaaacataatgtTGGATTCTAATTgccatgttttaaatgttcagcCTACACGGTATACATTGATGATACTCCCAACCCAGATCCTATCCGTAGAGCTTGATTCGTAAGATACGCTGTATCCAGTGAAGATTAATTTCTGAAGAGCTTCCAACAGTCACACTTGAGAGTGTTGGAAAGGATAGTGGTCCTGAACAGCCATCAGTAAAATTAGGTAATTCAGCATTATTTCCACACAATTGGGGaacaaaaatgtacttttttatttttatttttattactgtacattgtgcttgtaaatgtatttataaaaaatatatattataaactaaAGATTTGCTTAAAGAAGTCAGCTAATTTTATTCCATCATACAAGAGTTCCCATGGCCATTTGCAGGaaaacaaatttattaaaaagcagtgtgttaatACAACATGGAGTTGGGCTCAAAGAGACTTTTTGGGGGTTTGgtggtttttgtgtttttttgggtcatgTTGAAAATGACTTCGTTAAATGTACAGTGTAGAAAGGCAGTGCAACTGAGAGCAGTTTAAATTGAGTAATCAGATCCCACAGCTCAGCACAAATAACAATTTTTATTTGACACATGGTTATTCATTTGTTATATTTGTGATATGGAAGTGCAGTAGGTATGAAAGCTCAGTCAAgcgaaagaggaggaggagtactGCTACAGAAAATGACAGGAAGGAGTTGCTCATTGGAAGGCAGAAAGcaaaacacactaaaaactaAAGACAATTAAAATTAGTCTTCACTTATTGCTTTGCGATGTATGATGAATTATGGCTTTATTGTGTTTGAATGCAGATGTTTCATCATACCATGGTGTGCTTTCTCTACAGTTTTATGTGATATGTAtgtgtactttttaaataaagatttgtgT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651015.1 lncRNA downstream 6941 5968952 ~ 5970326 (-) True LOC111194292
TU188840 lncRNA downstream 49413 5905696 ~ 5927854 (-) False G139488
TU188837 lncRNA downstream 49413 5917595 ~ 5927854 (-) True G139488
TU188813 lncRNA downstream 177797 5797491 ~ 5799470 (-) True G139472
TU188782 lncRNA downstream 232378 5573137 ~ 5744889 (-) True G139443
TU188902 lncRNA upstream 44289 6042266 ~ 6061178 (-) True G139527
TU188904 lncRNA upstream 45239 6043216 ~ 6044731 (-) True G139528
XR_002651016.1 lncRNA upstream 87895 6085872 ~ 6086796 (-) True LOC111194293
TU188929 lncRNA upstream 167595 6165572 ~ 6169504 (-) False LOC111194291
XR_002651014.1 lncRNA upstream 167599 6165576 ~ 6166529 (-) True LOC111194291
XM_007229297.3 mRNA downstream 78467 5624859 ~ 5898800 (-) True b4galt2
XM_022677888.1 mRNA downstream 378492 5567184 ~ 5598775 (-) False ccdc24
XM_022677889.1 mRNA downstream 380313 5567184 ~ 5596954 (-) True ccdc24
XM_022677884.1 mRNA downstream 932258 5031419 ~ 5045009 (-) False LOC103027706
XM_022677883.1 mRNA downstream 932258 5031419 ~ 5045009 (-) True LOC103027706
XM_022677699.1 mRNA upstream 23121 6021098 ~ 6022596 (-) True LOC111194226
XM_022677913.1 mRNA upstream 40093 6038070 ~ 6054733 (-) False LOC111194281
XM_022677914.1 mRNA upstream 40093 6038070 ~ 6054733 (-) True LOC111194281
XM_022677912.1 mRNA upstream 40093 6038070 ~ 6054339 (-) False LOC111194281
XM_007258022.3 mRNA upstream 204831 6202808 ~ 6205849 (-) True LOC103029970
TU188315 other downstream 646462 5330078 ~ 5330805 (-) True G139105
TU188266 other downstream 700799 5276106 ~ 5276468 (-) True G139074
XR_002651007.1 other downstream 1639070 4333133 ~ 4338197 (-) False LOC103034146
TU188021 other downstream 1639173 4335991 ~ 4338094 (-) False LOC103034146
TU188022 other downstream 1641378 4331650 ~ 4335889 (-) False LOC103034146
TU188844 other upstream 11076 6009053 ~ 6010867 (-) True G139489
XR_002651012.1 other upstream 24632 6022609 ~ 6054339 (-) False LOC111194281
XR_002651013.1 other upstream 122142 6120119 ~ 6124125 (-) True LOC103026010
TU188831 other upstream 306992 6304969 ~ 6374709 (-) True G139487
TU188973 other upstream 419408 6417385 ~ 6430319 (-) True G139587

Expression Profile