G139443


Basic Information

Item Value
gene id G139443
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 5573137 ~ 5744889 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU188782
gtacaggacatacagagaattgaaattacgttactctccttcccaattttacagcagtacagataatagatataataaaagaaagaatgggagacactatgtgtacaatacagcagggacacaaatagacatacatgagacagaacaaggtgcagtagtgtgggggagaaatagatatataaatataagtaaaaagatataagatatataatataaaagagtgggagacactatatgtacaaaacaacaagacacaataaacataagtAAGAcgaaagacaatagtgcaatattgatggtgattgagatgagaatgacagtataaatagtatataacagtagtgcaaatatggtctatagcttaaggctggtaacgtgaatgagtgcgtaaaggACTTTTTTGGGGAgttaaagtgcgtattgacagtgcaagtatagcagtagtgctggtattgggtgtgtagtgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188782 True 467 lncRNA 0.35 2 5573137 5744889

Neighbor

gene id symbol gene type direction distance location
LOC103027706 acvr1l,LOC108428902,LOC108267867,LOC107678695,LOC107602619,LOC107749086,LOC107721710 coding downstream 528128 5031419 ~ 5045009 (-)
LOC103027391 crlf1a,crlf1,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding downstream 767470 4771793 ~ 4805667 (-)
LOC103039917 LOC103039917,LOC108428861,LOC107602632,LOC107749223,LOC108267126,LOC107721708,LOC107588920 coding downstream 805844 4761753 ~ 4767293 (-)
LOC103039099 wdr48,LOC103039099,LOC108428893,LOC108268031 coding downstream 824384 4738988 ~ 4748753 (-)
LOC103038044 coa1,LOC103038044,LOC108428892,LOC108267121,LOC107600219 coding downstream 845609 4723386 ~ 4727528 (-)
LOC103034342 NA coding upstream 232378 5977267 ~ 5997977 (-)
LOC111194226 NA coding upstream 276209 6021098 ~ 6022596 (-)
LOC103029970 NA coding upstream 457919 6202808 ~ 6205849 (-)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277,LOC107722067 coding upstream 694760 6439649 ~ 6473720 (-)
lamc2 NA coding upstream 766208 6511097 ~ 6549467 (-)
G139435 slc6a9,LOC107739827 non-coding downstream 21075 5545244 ~ 5552062 (-)
G139155 NA non-coding downstream 117115 5455746 ~ 5456022 (-)
G139150 NA non-coding downstream 130231 5442556 ~ 5442906 (-)
G139149 LOC108415780 non-coding downstream 130710 5441786 ~ 5442427 (-)
G139110 NA non-coding downstream 227103 5344829 ~ 5346034 (-)
G139472 NA non-coding upstream 52602 5797491 ~ 5799470 (-)
G139488 atp6v0b,LOC102788333 non-coding upstream 160807 5905696 ~ 5927854 (-)
LOC111194292 NA non-coding upstream 224063 5968952 ~ 5970326 (-)
G139518 NA non-coding upstream 240542 5985431 ~ 5986076 (-)
G139527 NA non-coding upstream 297377 6042266 ~ 6061178 (-)
G139105 NA other downstream 242332 5330078 ~ 5330805 (-)
G139074 NA other downstream 296669 5276106 ~ 5276468 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other downstream 1234940 4330871 ~ 4338197 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other downstream 1711781 3847722 ~ 3861356 (-)
G138708 NA other downstream 1739467 3832721 ~ 3833670 (-)
G139489 NA other upstream 264164 6009053 ~ 6010867 (-)
LOC111194281 NA other upstream 277720 6022609 ~ 6054733 (-)
G139487 NA other upstream 560080 6304969 ~ 6374709 (-)
G139587 NA other upstream 672496 6417385 ~ 6430319 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other upstream 820014 6564903 ~ 6689723 (-)

Expression


Co-expression Network