RNA id: XM_022678444.1


Basic Information

Item Value
RNA id XM_022678444.1
length 1037
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC103039994
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 34189634 ~ 34191960 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TATAAATATTCTACAGTCAGACAAGCAAATcgttttaaaaatttaaatagcgtggaaaaaaataaaataaaatattgaaaatatgcGTTTCTATGGCTACAAAAGTGACGCGGCGCGCGTCCTCCTTCAGCGCGATGATTGGACGGTTGTTTTGTTTACAGAGTTTCTGAACTCGAgacaaacagcagcagaagcagcgtTTACCTGAGGACATCCAGCGATTTTTCAACGACAGACCCTTTTATTCTtgaatatttactgttttattaactctattgtgttttattaccatattattgtgatattatctgttacaaatcttatatattttgtttttcaggtGTTGAAACCGGTGTGGGTATACTGACACCCCGCGGTCAAACATGAGTGAAGATTATCGCCTAGAGGGCACTGAGGAGCTGAGGGCTGCATGTCTGCAGTGGCAGGGTGAGGGTCCAGACCCCTGGATGGAGCTCAGGAGGGTTCAGCTCGAGTTCCTTGAGGGGAAGCTGAAGGCCCTCATTCAGAAGgtgGAGTCTCAGTGCGCACAAGACCCCCTCATTCTCCTGCCTTCTTGCGGCACCGAGGAGCCAGACCTCTGGATGAAGCTCAGGAGGGTTCAGCTCAAGTTCCTCGAGGGGAAGCTGAAGGCCCTCAGTGAGAAGCTTTCCTGTCCCAGGCGACATGTTGGTAGAGTCCTGGTGCCGGTTAGGGAGGCAGCCCCCGCCCACAGGCTAGACTCTACCAAGCCTGATATCACAGGTCCAATTGCACAGTGCCAAGAAGCTCCAGACCCAGacctcaccaccaccacctctcaTCCGGAGCCATCCAGCCAGGGGGACACTGCACTGTCACCCACCACTAATACACAGCGCAGATCCCTTAAACGCATTGTCACTCACTTTAGGACCTCCATTGTGTCTCGTTTCAGGTCTCCTAGATTTAACCACAGTTGCTTTACGTACATAGATATAGAGATAGATGTAGGATACACAtagaaacacacatacacactctaataaactcacatatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU197914 lncRNA upstream 111744 34074324 ~ 34077890 (+) False LOC103033902
TU197915 lncRNA upstream 111744 34074324 ~ 34077890 (+) False LOC103033902
TU197916 lncRNA upstream 111744 34074324 ~ 34077890 (+) False LOC103033902
TU197912 lncRNA upstream 124125 34029326 ~ 34065509 (+) True G146265
TU197880 lncRNA upstream 285345 33882808 ~ 33904289 (+) True G146243
TU197953 lncRNA downstream 17182 34209142 ~ 34211321 (+) True G146296
TU198139 lncRNA downstream 397007 34588967 ~ 34589166 (+) True G146424
TU198158 lncRNA downstream 561962 34753922 ~ 34754396 (+) True G146441
TU198178 lncRNA downstream 902401 35094361 ~ 35157475 (+) False G146457
TU198176 lncRNA downstream 922223 35114183 ~ 35157475 (+) True G146457
XM_007242054.3 mRNA upstream 19389 34115141 ~ 34170245 (+) False LOC103032728
XM_007242053.3 mRNA upstream 25242 34115141 ~ 34164392 (+) True LOC103032728
XM_007242057.3 mRNA upstream 111659 34067581 ~ 34077975 (+) True LOC103033902
XM_007242056.3 mRNA upstream 127667 34028450 ~ 34061967 (+) True LOC103033595
XM_022678441.1 mRNA upstream 164261 34012482 ~ 34025373 (+) False dthd1
XM_007242050.3 mRNA downstream 184762 34376722 ~ 34383744 (+) True rwdd4
XM_007242051.2 mRNA downstream 193370 34385330 ~ 34423139 (+) True LOC103032224
XM_007242052.2 mRNA downstream 193370 34385330 ~ 34423139 (+) False LOC103032224
XM_022678445.1 mRNA downstream 489338 34681298 ~ 35048688 (+) True LOC103039377
XM_007242041.3 mRNA downstream 1004296 35196256 ~ 35273019 (+) True LOC103029357
TU197717 other upstream 1577072 32612125 ~ 32612562 (+) True G146104
trnae-uuc_22 other upstream 2118208 32071355 ~ 32071426 (+) False trnae-uuc_22
TU197207 other upstream 2835190 31352296 ~ 31354444 (+) True G145748
TU197164 other upstream 2967300 31197218 ~ 31222334 (+) True G145711
TU197121 other upstream 3059611 31073973 ~ 31130023 (+) False LOC103044823
TU198225 other downstream 1207863 35399823 ~ 35402380 (+) False cct7
TU198654 other downstream 2299552 36491512 ~ 36494457 (+) True G146805
XR_454044.3 other downstream 2498733 36690693 ~ 36719287 (+) True acap1
TU198917 other downstream 2847022 37038982 ~ 37042227 (+) False c16h4orf48
TU199586 other downstream 4422918 38614878 ~ 38615355 (+) True G147496

Expression Profile