RNA id: XM_007249783.3


Basic Information

Item Value
RNA id XM_007249783.3
length 5363
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC103024028
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 10165676 ~ 10191798 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGTCAAGCTGATGCGCATGCACGAAGGACAGCATACATGTGTGCGTGTcactgtgtgtggtagtgtgtgtgtgtgtgtgacgccAGTGACAGTCTTTAACTCTGCATCACACACTGAGATCAGGGTTTATGTCTGCAGGCTTCTGTCGCACTGGATATGAGAGCAGCTGGATTTGCTGGGAGAGAACGTGACGgaccGAGCGGAATGAACCAAGACTGTTGAAAGAGAGATGACTGTAGACccaaacaggaaataaagcTTGAAGTGCATGACAGAATTTGtatctttttgaactgcttttggatatagTTCGCTGTGAGTGGCAACATAAGACGACCAGGGATCTGAAGATGAACCCCTATGTTACCTCTCAGTTCAGGAAAGATCTTTTTCCACACTTTCATTtattgctctgtttttttaaatctttgatTTGTATCAGTTTTCAAATCGAGCCTTTTTGAATACAGACTGCAAACGTTTTCATTTCCTCTTCTGCTGTGCCTTCATATGGTCTATTTCaggtatttaaaatgttttcccATGAGCAGCACCCCCTTAAATTATACTACATATATGCCAAGATCATGGGTTTGAAAGTAACTTGAATCAAGCTTTATTTGTATCCACTCCTAAATCATGCACGTCTCTTCTTCCAGTTGTTGCTTGTTCCTGTCTGCGGGGATATTGATTACTTCCTGCATGTTCCGTTTTTCTCTCAGCTTGccccttttttagtttttggccTCCTTTTCACAGATGTTGTAAAAAGGTGTATGTTCTTTTAAGCTTTCCAACTGAGTTGACTGACTAgacactaaaaatataaaatatgaatgtaTTTCCTGGGTCTGAAGACCTGAGAGACTGAAGGCTGTGCTGTGGTAACCATTGGAAAAGTCTCATCAATCACCTGGAGGTTTTAAATCCATTTGTATTATAAGTtgttcttattttgttttacagatTTATTCTGCACAACACATTggcttctttttctctattctaaaaaaaaaacagactttcGGTTCTGGGCCTCTTGATATATTAAGTTTCCTTCCCACACAGTCTTCCTTTTAATGAGGACAATTTTCTCATAACCTGTACTTCTCTCAAACGAAAGCAGCCATTTTTCTTCACTAGTCTCCACTGGAATTCAGTTCAGGTGAATGTTTGAAGCTGTTCAAGAGACATGTGCTGTTACACAAAATGACAGTGTCTTTTGGAGAACTGGGACAGAGCTTTGCTGAAGCTAAATGAAAGAGGACAGCAGATCAAATCCAGCATGGACATGGAACTGTGACAGAGCATCCTCTGTGATTTGGTGATTTTTGTTTGCTACATCATGGTGAGGGGTAATTGGAGTACATTGTGATCTGTGCGGACTCTACACCTGTTGAACAAACGCAAATCTAGTGAGTAATGAAAGTTATATCTACGTCACTGCAggctttatatatatgtgtatacagAAAACTACATAATACTTCAGTAATTCTCTATAaatcttctttctcttttgttttaaatatctttCATCTCCCAAAGGAAGCTAAAGAATCTGTGTGGGGACAAATCGGTCTGTATAggcatgctgtttttttatttgttggcTGATTTAGTTGGATGGCTGTTTGTTAAATGCATGcctcaaaccttttttttcttttcctttgtcatactgtatatactgtcaTACTCCCCTGTGTTTCCTGCAAGGATTCTTTACTGGGTTTCACCATTCTTTTAGTTTGCTTTATTTCCACCCCTCTTGATGAATTCTCGGTATACCTCAGTGTAACTGCCCATGCCTgcctttagtttgtttcttgcCTAAGCCAAACCTTGTCTGTTTGTATCTCTAAATTTTTGTGATTGTCtccatatgtatatatgtgcacCGCTTGTATATTTCACATGTTTGTTTTCTACATGAGCTGACCAAGAAACATTGCTGCATATTCTTTCAACATTGCTGCTGGAAGTGTCATCTGTGGTACTAAAGTCTATGGACTTGTATCCAGTGGAGATGTCCGTTTTGGATGCCCATCTTTGGAAGCTCTGGTTTGTTTGGGATGACTTTTATAGTGTTTGGGCCACAGGCGCTTTTGGTCTCCCAGGATTTGAATCTCCTAGTCAATAAACAAGACTTTGGAAAGAGATTTTGAAAAGTAAAGAAACATTGTATGAACCTACTCACCAAAGTTTTTCCATCttacagctttttaaaactggATTAACCCTCAAAAAAGGGGATTCATGACTTCAAGTATGTgtacatgtgtatgtgtgtacttGTGTTTATATGTAGCTACCAGCTCTATTCTTTCGTCTGCATAGACACTCATTCACCCTGAAGTCTCCAGTTATGGGAGCTGCTCGGGTCAAGCGGCGCTTCAGCGCAGTGGTGGATACGCCCCTTGATGAAGAGGAGGTCATGAGGCTAGCTCAGAGTGATGATGTCACAGGGGCCTGTGGTGGGGGTCCCCCATCTCCAACTTGTAATGGCAAACTGCTCAACTTGCACCACGGCAATGGAGGAGGAGCACCAGGGAGGAGTGGTGAGGGtgatgaggaggatgatgatgatgaagatgatgatgaatgtGATGAAGCAATCAGTGGAaggaggggaggaggagggAAAGGAGGCCGTGGCCCGGCACTCGGGGGTGCTGGCAGGCGGGAAGGGGGGTGGCAGCGAGCCCAGGGGAGTTGTTCCCCATCTCCTTCCCCTTCGCCCCCCCTGTGTCTCCCAGGCCACCGCCGCCGCCGGCCCCGTGGGCGCTTTGTGGGCAAGGACGGCCGCTGCAACGTCACCTTCGTCAACATGAGCGACAGGGGCCAGCGCTACCTCACTGACCTCTTcaccacatgtgtggacatccgCTGGCGCTGGATGCTGGTGGTCTTCACCCTCTCCTTCCTGCTCTCCTGGTTGCTTTTTGGTTTCACCTTCTGGCTCATCGCTGCTGCACATGGGGACCTAACAGTGCgaccatcatcatcctcctcctccacagccacttcttcctcttcttcttcttctcagtcaacctcactggactctaaaGTGGAGCATTCTAGTGCAACAGTAGTAAATCCTGAGGAACACTGCTTTCAGCAGGTAAACAGCTTCATGGCTGCTTTCCTATTCTCTCTGGAGACTCAAACCTCTATAGGCTACGGTTTCCGCAGTGTGACGGAGGCCTGCCCCCTGGCGGTGCTGGCTGTCGTCTTGCAGTGCATTGTGGGCTGCATCATCGACGCTTTCATCATCGGGGCGGTCATGGCCAAGATAGCCAAGCCCAAAAAGCGCAACGAGACACTGGTGTTCTCGGATGTGGCCGTGGTGGCGATGAGGGACGGGAAGCTCTGCATGATGTGGCGTGTGGGAAACATGCGCAAGAGCCACCTGGTGGAGGCCCATGTCCGAGCACAGCTACTGAAGCCAAGGTTGACCCCAGAGGGGGAGTTCCTACCTTTAGACCATGTGGACATCAATGTAGGCTTCGACACAGGGACTGACCGAATCTTCCTGGTGTCTCCGGTGACCATCGTGCACGAGATTGATGAGGAGAGCCCGTTCTTTGAGATGGACCGGCGGAAACTGGAGTCTGATGAGGAGCTGGAGGTTGTGGTCATTCTGGAGGGCATGGTTGAAGCCACGGCCATGACCACACAGTGCCGCTCTTCTTACCTGGCTTCTGAGATACTTTGGGGTCACCGCTTTGAGCCTGTGCTCTTCGAAAAGAAAAACTGCTACCAGGTGGACTACTCGTACTTCAACAGGACTTATGAGGTTCCAGACACGCCGTGCAGCAGCGCTAAAGATCTGGCGGAGAAAAAATACATCCTGGGCTCCCGTTCCTCTTTCTGCTACGAGAACGAAGTGGCATTGCAGCTCTCCTCGTCTGCTCCTCCCTCCCCCAGCAAAATCTCTCcatccccctctccctctccttcaCCCACACTCCCCACACCCCCACCCCGGCGCGGCTCCCGCAATgagcacccacacacacattgagcCCCCCCAAGTGCCGGGGGCAAAGGGCATTGGGCACAGGGGAGAATTAGGgtcagacagagggagagagaagagagtgaagTGAGACAGAGGGCAAAGAAAGAGGACAGTTAGAGGTAATGATGGGGTTCAATGAGGACAGAGAGAAAGCCTGAGACAAAGAACGAGAACTTTGACTGGGCAGGCAGTAAAGAAAAGAATAGGGATGGGATTAATGACAGTGGGTCATAATCAGGAGAATAGGACAAGGAAAGAGAAAATGGCTGAGAAGGGGAAAGGTGGGGGTAGGGTCCTTTCCTTAAGCATGACTTAAGGAAGCAGGGATAGAGAGATGAGCATGAATATCAGATCAGGACTGAAGCCTAACAGGAACAGCGTGGTGCAGCCCACATGTAGGATCAGTCAATGAAAGTGTACTGAGGATTAGCGTGAGGCAGAAATTAAACCCTGCCACGGAACAGGGCATGGTTGTAGTGGGAAAGGTCAGCAGGAAAGTTGGGGTAAGTAAAGCTCAGGTTAGGATctgcaaaaaaacagatgaaaatTAAGTGaccaaatataaaaaacaaatttgccTCCAGAAAATAAGACATAGATTGGACAGAAAGTGTATGtgcttgagagagagagagagagagagagagagagagagagagagagagagagagaaagggagggattGACAGGGCTATTTTGAGATGAGGAGGGCTGCAATGCTGACCCACTTGGCTGATTGGACCTGGCAATCTTTCACAATCAGGGGAAACTGTTCACTGGGTTCTGTTTGTGGCAGAACACCAGCCTGGTTCTGCTCTAGCAAGTACCTAACAGAAACTCAACAGTGATCCCATGTGGCAGCAACAAGTAACAACAAGTCAATGTGCTTCTAAATTGGTGTAGGCAAAACGCCCAGTATCAGTAAACCATTacaaacaaacataacaaaCACTCACAGTAAGATGGGAGGGAGAGTGCCAATGCTTATGATACACTCTCTTTAACCACCTTTTGTGCTTtggtttttacgtttttttctgtctgtctgttttgcaCAGACATCGGCTACAACCTGATACAGAATATCAGTAACTGGATTAATGAACAACCTTCATTCAGTGATGAAGTGTATTGTTTCCAGAATACTTGTTGCAGGTTCTGTTGTGTCTTCGACTGGATGTTGGTCTACTTGCTAGAGCTGTTATAGAGCAAGACACCATTGGAAATCTGCTGTACTTGATGTTTCTGTATGTACTGTGTGTCATGATTAtatgtcattgttttttttatttaattactattCCATGTATTCAATAcagagcatatatatatata

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005242 inward rectifier potassium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120706 lncRNA downstream 99670 10064160 ~ 10066006 (-) True G89732
TU120688 lncRNA downstream 122823 10033858 ~ 10042853 (-) False LOC103025178
TU120754 lncRNA upstream 262586 10452569 ~ 10453464 (-) True G89766
TU120760 lncRNA upstream 262586 10452569 ~ 10453464 (-) False G89766
TU120765 lncRNA upstream 262586 10452569 ~ 10453464 (-) False G89766
TU120772 lncRNA upstream 270454 10460437 ~ 10460823 (-) True G89768
TU120773 lncRNA upstream 273682 10463665 ~ 10464175 (-) True G89769
XM_022673497.1 mRNA downstream 4680 10106091 ~ 10160996 (-) False LOC103039091
XM_022673495.1 mRNA downstream 4680 10106091 ~ 10160996 (-) False LOC103039091
XM_022673493.1 mRNA downstream 4680 10106091 ~ 10160996 (-) True LOC103039091
XM_022673496.1 mRNA downstream 4680 10106091 ~ 10160996 (-) False LOC103039091
XM_022673491.1 mRNA downstream 4680 10110231 ~ 10160996 (-) False LOC103039091
XM_015605915.2 mRNA upstream 59316 10249299 ~ 10424477 (-) False LOC103022457
XM_015605916.2 mRNA upstream 59316 10249299 ~ 10424477 (-) False LOC103022457
XM_015605914.2 mRNA upstream 59316 10249299 ~ 10424477 (-) True LOC103022457
XM_015605917.2 mRNA upstream 59316 10249299 ~ 10424476 (-) False LOC103022457
XM_007249775.3 mRNA upstream 465488 10655471 ~ 10659606 (-) False lysmd1
TU120687 other downstream 122823 10039557 ~ 10042853 (-) False LOC103025178
TU120653 other downstream 201070 9961282 ~ 9964606 (-) True G89708
TU120626 other downstream 263976 9894825 ~ 9901700 (-) True G89690
TU120441 other downstream 311602 9802771 ~ 9854074 (-) False LOC103029706
TU119448 other downstream 2923106 7241711 ~ 7242570 (-) True G88789
TU120738 other upstream 33537 10223520 ~ 10224663 (-) True G89751
XR_002650431.1 other upstream 465488 10655471 ~ 10659127 (-) False lysmd1
XR_002650430.1 other upstream 492373 10682356 ~ 10695334 (-) False vps72
TU120896 other upstream 542961 10732944 ~ 10743715 (-) False LOC103045558
XR_002650434.1 other upstream 1418785 11608768 ~ 11630001 (-) False LOC103031398

Expression Profile