RNA id: TU55130


Basic Information

Item Value
RNA id TU55130
length 590
RNA type TUCP
GC content 0.44
exon number 1
gene id G40959
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 8234107 ~ 8234696 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aggtccccagccccccaacacataaagctggcaaacatctagacctgatcttcactcgtaactgtgacaccgactctctaactgtcactcctttgcacgtctcagatcactactttatgaaactcaatgttcatatttcaaataaacccacagctactcctactatggtctcgttccgccaaaatcttcgagatctctcagcagaccagtactcctcgctggtgactgacaatatgcctccaccaggctcattttcatcactcaatgtaaatgatgccactgacactctctgctccacactaagctcctgtttggacaacctctgtcctcttacatctcgagccattagctcaaacaaaccgcagccatggcttaaaaatgacacactcagggaactacgctccaaactccgagctgccgaaagaaaatggcaaaaaaacaaaaaacaagcagacctaaaaaattaccaactgctcctggcttctttttcagccagcctcactactgctaaagctgaattttatcacaataaattctgctctctcacagactcccggaaactatttgctacatttaaatcactactcaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55124 lncRNA downstream 67616 8166147 ~ 8166491 (-) True G40953
TU55121 lncRNA downstream 68446 8165392 ~ 8165661 (-) True G40951
TU55118 lncRNA downstream 70080 8163792 ~ 8164027 (-) True G40948
TU55107 lncRNA downstream 161019 8071090 ~ 8073088 (-) True G40939
TU55075 lncRNA downstream 484980 7748723 ~ 7749127 (-) False LOC103030262
TU55174 lncRNA upstream 121306 8356002 ~ 8427095 (-) False fam43a
TU55180 lncRNA upstream 127153 8361849 ~ 8364421 (-) True G40996
TU55183 lncRNA upstream 129960 8364656 ~ 8370402 (-) True G40997
TU55188 lncRNA upstream 141388 8376084 ~ 8377950 (-) True G41001
TU55201 lncRNA upstream 220583 8455279 ~ 8455709 (-) True G41012
XM_022670146.1 mRNA downstream 146921 7514543 ~ 8087186 (-) True LOC103030262
XM_022669533.1 mRNA downstream 2053010 6168759 ~ 6181097 (-) True LOC111192501
XM_022669532.1 mRNA downstream 2219405 5873377 ~ 6014702 (-) False LOC103034882
XM_022669531.1 mRNA downstream 2219405 5873377 ~ 6014702 (-) True LOC103034882
XM_007237234.2 mRNA downstream 2525647 5694706 ~ 5708460 (-) False asb7
XM_007252575.3 mRNA upstream 121303 8355999 ~ 8358507 (-) True fam43a
XM_022669543.1 mRNA upstream 532434 8767130 ~ 8773967 (-) True LOC103027404
XM_022669544.1 mRNA upstream 544335 8779031 ~ 8789891 (-) True LOC103027111
XM_022669546.1 mRNA upstream 557301 8791997 ~ 8798952 (-) True LOC103026828
XM_022669547.1 mRNA upstream 576987 8811683 ~ 8823738 (-) True LOC103026545
TU54904 other downstream 1760033 6471432 ~ 6474074 (-) True G40751
TU54841 other downstream 2141772 6091811 ~ 6092335 (-) True G40696
trnal-uag_2 other downstream 2376831 5857195 ~ 5857276 (-) True trnal-uag_2
TU54765 other downstream 2525656 5694424 ~ 5708451 (-) True asb7
TU54284 other downstream 4470653 3755724 ~ 3763454 (-) True stard5
TU55253 other upstream 341155 8575851 ~ 8624441 (-) True G41052
TU55285 other upstream 463217 8697913 ~ 8740282 (-) True G41071
XR_002649929.1 other upstream 877382 9112078 ~ 9122428 (-) False LOC103022371
TU55824 other upstream 1715170 9949866 ~ 9953351 (-) False G41514
TU55838 other upstream 1727919 9962615 ~ 9963962 (-) True G41522

Expression Profile