RNA id: XM_022669544.1


Basic Information

Item Value
RNA id XM_022669544.1
length 1697
RNA type mRNA
GC content 0.56
exon number 7
gene id LOC103027111
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 8779031 ~ 8789891 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATGCTGGTTCCCTGATCTtcgtggtgtgtgtgagagtgtgtgtgtgtgtgttatagacAGAGAATGGAAGAGAGCAGCCGCAGTATGAAACGGTGtgtgcagctgctgctgctgctgctgctggcggTCGCCTGCACACACGGAGCCCCCGCCAACAAAACGCCCCCCAGTTCCTGCAAGGACGGCTTAGCTACGGCAGCTGCAGCTCAGGCCATGGACAAAATCAACCAGGAGCGCAGCGAGGGATACGTCTTCAGCATGGAGCGCCTCAGCAACGTCCACCAGATGCGCCACGGGGAAACTGGAGTTGTGTATTATCTAACAATCGATGTCCTGGAGACCAAGTGTCACGTCCTCAGCAAGAAGAACTGGAGGAACTGCAGTGTTCGAGATATTGGTGAAAATCCGGTTTATGGTCAGTGTAAGGCGGTGATGTACATCAATAGAGTTCACAGAGTGTCTCGCCTCTACAAATACAGCTGTGGAGTCCggcctgtcccCGCCTCCAAAATTGCAGCAGTCTGCCCTGACTGTCCGGTTCTGTTCCCTCTGGATCATGAAGAAGTCCAAAAGACGATGAAGCTGGGCATGGAGAAATTTAACAAGGAGCACATGCCTGCTAACTACTTTATTCCCCTTAACATCACCAGAGCTACCAGCCAGGGAGGGATTATGACCTTTTACAGCGTGGAGTTCACCATCCAGGAGACAGTCTGCTCCAACAATACTGATTTAGCTGAGATTTCAAAATGTGACGTCATGGTCTGCGAGTTTGCAGTAACACAAGGTCTTTGCAAAGCCAGCCTTTCTCGATCCAATGGAAACGAGCACCTGAGTGTGGAGTGTGAAATCTTCGAACCTGAGGCTGccgaggaggagaagaagaggcATCTGCTGGGAGGAGAGCTGGATCACAGCCACAGCAACATCGGTGATAAGTCTTTAGGGCATGACCACACTCATGACCACACCCACtcccacactcacactcactcccaCGACCATGACCACGCCCAAGGCCACGCCCACGACCACGACCACAAGGCCTCGCACGCCCACGACCACTCCCAGGACTCCGGCCACCACCACACGCACGAACACAGCGAGGGTCACGGCCACTCCCACAGCCACGCCCACTCTCACGACCACAGTCACGACCACGATCACGGCCACGCCCACCACGTCAAAGCCCACAACCACACCCAGGACCAGGGCAAGCACCCCCATCACAACTACGGCCACGGCAACGAGGAAACCCACGAGCACGACCACGAACTGGCGCTGGATCACGAGCACAAACACGCACATCTCCACGAGCAcgagcaccaccaccaccaccacgagCACCAGCACGACACTGCGGCCAAGCGGCCCGAGGGCGTGGTCTACTTCCTCCCCTCCATGGACAAGCCCATGACCCTCCCCGCCTTCCCCCTGGAGCCCGTGGCAGATCCGGCACAGCCCACCACGCTGGCCCTGCACCCGGACCCCCAGATCCCCGGAGAGAGGGAGCCCACCATCAAGCCCTTCCCCGCCGGCCTGTCCAAAGACTGTCCTGCAGACTTCAAGACTGAGAACAAGCTCATCAAGGAGGTCTTCGCTCAGGACCCTCTCTTCAAAAGCATGTGACAAAAAAGCTGAATGTAGCTGATAATGTCCTGATGTGCAATAAAAAGAGCATGATTGGAAAAAACAC

Function

GO: NA

KEGG:

id description
K23411 FETUB; fetuin-B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55301 lncRNA downstream 14500 8761524 ~ 8764531 (-) True G41078
TU55289 lncRNA downstream 60161 8704284 ~ 8718870 (-) False G41072
TU55287 lncRNA downstream 62433 8704284 ~ 8716598 (-) True G41072
TU55277 lncRNA downstream 89708 8686636 ~ 8689323 (-) True G41065
TU55222 lncRNA downstream 256836 8521286 ~ 8522195 (-) True G41028
TU55316 lncRNA upstream 1031 8790922 ~ 8802683 (-) True G41085
TU55409 lncRNA upstream 131677 8921568 ~ 8921815 (-) True G41148
TU55415 lncRNA upstream 138571 8928462 ~ 8935377 (-) True G41154
TU55441 lncRNA upstream 233693 9023584 ~ 9080992 (-) True G41176
TU55444 lncRNA upstream 248303 9038194 ~ 9059384 (-) True G41179
XM_022669543.1 mRNA downstream 5064 8767130 ~ 8773967 (-) True LOC103027404
XM_007252575.3 mRNA downstream 420524 8355999 ~ 8358507 (-) True fam43a
XM_022670146.1 mRNA downstream 691845 7514543 ~ 8087186 (-) True LOC103030262
XM_022669533.1 mRNA downstream 2597934 6168759 ~ 6181097 (-) True LOC111192501
XM_022669532.1 mRNA downstream 2764329 5873377 ~ 6014702 (-) False LOC103034882
XM_022669546.1 mRNA upstream 2106 8791997 ~ 8798952 (-) True LOC103026828
XM_022669547.1 mRNA upstream 21792 8811683 ~ 8823738 (-) True LOC103026545
XM_007252571.3 mRNA upstream 147414 8937305 ~ 8942121 (-) True ncbp2
XM_007252570.3 mRNA upstream 322187 9112078 ~ 9122428 (-) True LOC103022371
XM_007237348.3 mRNA upstream 1189690 9979581 ~ 9993252 (-) True hyls1
TU55285 other downstream 38749 8697913 ~ 8740282 (-) True G41071
TU55253 other downstream 154590 8575851 ~ 8624441 (-) True G41052
TU55130 other downstream 544335 8234107 ~ 8234696 (-) True G40959
TU54904 other downstream 2304957 6471432 ~ 6474074 (-) True G40751
TU54841 other downstream 2686696 6091811 ~ 6092335 (-) True G40696
XR_002649929.1 other upstream 322187 9112078 ~ 9122428 (-) False LOC103022371
TU55824 other upstream 1159975 9949866 ~ 9953351 (-) False G41514
TU55838 other upstream 1172724 9962615 ~ 9963962 (-) True G41522
TU55869 other upstream 1373569 10163460 ~ 10225826 (-) False G41543
TU55870 other upstream 1373569 10163460 ~ 10225826 (-) True G41543

Expression Profile