RNA id: TU55444


Basic Information

Item Value
RNA id TU55444
length 449
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G41179
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 9038194 ~ 9059384 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cattcacacaaagcaatccagactgttctcatacagagttccccaatggtgaaacaaactaccttctactaccagatcaggagaatctctcactatctttaagaaactcctgaagacagagctcttcaaagagcacttactctcctaacacctctaactaactaccttctactaccagatcaggagaatctctcactatctttaagaaactcctgaagacagagctcttcaaagagcacttactctcttaacacctctaacacactaactacttctaacctcatttccttcttcccctccttcactcctctatcctattattcccctttgacctccttttatccctatccaaagatgttttacctttaaacttattttacattgtacttgactattgtaagtcgctttggacaaaagcgtctgccaaatgtaatgtaatgtaatgtaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55415 lncRNA downstream 102817 8928462 ~ 8935377 (-) True G41154
TU55409 lncRNA downstream 116379 8921568 ~ 8921815 (-) True G41148
TU55316 lncRNA downstream 235511 8790922 ~ 8802683 (-) True G41085
TU55301 lncRNA downstream 273663 8761524 ~ 8764531 (-) True G41078
TU55289 lncRNA downstream 319324 8704284 ~ 8718870 (-) False G41072
TU55470 lncRNA upstream 57061 9116445 ~ 9118432 (-) True G41200
TU55512 lncRNA upstream 243240 9302624 ~ 9302948 (-) True G41236
TU55519 lncRNA upstream 295133 9354517 ~ 9354753 (-) True G41243
TU55613 lncRNA upstream 704526 9763910 ~ 9764373 (-) True G41329
TU55666 lncRNA upstream 745610 9804994 ~ 9843913 (-) True G41380
XM_007252571.3 mRNA downstream 96073 8937305 ~ 8942121 (-) True ncbp2
XM_022669547.1 mRNA downstream 214456 8811683 ~ 8823738 (-) True LOC103026545
XM_022669546.1 mRNA downstream 239242 8791997 ~ 8798952 (-) True LOC103026828
XM_022669544.1 mRNA downstream 248303 8779031 ~ 8789891 (-) True LOC103027111
XM_022669543.1 mRNA downstream 264227 8767130 ~ 8773967 (-) True LOC103027404
XM_007252570.3 mRNA upstream 52694 9112078 ~ 9122428 (-) True LOC103022371
XM_007237348.3 mRNA upstream 920197 9979581 ~ 9993252 (-) True hyls1
XM_007237344.3 mRNA upstream 963665 10023049 ~ 10029625 (-) True LOC103037233
XM_022669581.1 mRNA upstream 975945 10035329 ~ 10069803 (-) True LOC103036321
XM_007237338.3 mRNA upstream 1019470 10078854 ~ 10126523 (-) True ly75
TU55285 other downstream 297912 8697913 ~ 8740282 (-) True G41071
TU55253 other downstream 413753 8575851 ~ 8624441 (-) True G41052
TU55130 other downstream 803498 8234107 ~ 8234696 (-) True G40959
TU54904 other downstream 2564120 6471432 ~ 6474074 (-) True G40751
TU54841 other downstream 2945859 6091811 ~ 6092335 (-) True G40696
XR_002649929.1 other upstream 52694 9112078 ~ 9122428 (-) False LOC103022371
TU55824 other upstream 890482 9949866 ~ 9953351 (-) False G41514
TU55838 other upstream 903231 9962615 ~ 9963962 (-) True G41522
TU55869 other upstream 1104076 10163460 ~ 10225826 (-) False G41543
TU55870 other upstream 1104076 10163460 ~ 10225826 (-) True G41543

Expression Profile