RNA id: XM_007237338.3


Basic Information

Item Value
RNA id XM_007237338.3
length 6622
RNA type mRNA
GC content 0.49
exon number 35
gene id ly75
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 10078854 ~ 10126523 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCGGAGGGCAATAACAGGAGCGGTGAGGAAAACAGACGGGCGCAGTTGTAACTGGGAGCTCCGGGTGGCTTTACGGAGACTAATGACTGAAGTGGGAGCGCTGTAGGTGTTCTGGAGTTCTGGAGTTATGGACCGGGCCGGGCGGGCGGTTCTGGGCTGGTTGCTGTGTGTAGTTCTGTGTCAGAGCGCGGTTCGGTGCGGGGGCTCCGGTGATGGCACCTTCACTATCCAGCACGAGGGCTCAAGAAAATGTTTGCAGGTGCAGCACGGTGCTCTAGTGTTGGGAAACTGTTCGGCGGAGCCGTCCTGTTTGTGGAAATGGGGCTCAGCTCGTCGGCTCTTTCACACTGGCTCGTCTGCCTGCCTGGGCATGTATGTGCCCAACAAAACGCTGTCCCTCACCAGCTGTTTGGCGGAGCCCCAGCTGCAGTGGTACTGCAACGAGGGATCCCTTTTTACCATCTATCAGATGAAGCTGAGCGCTACTGCCAACGGGACTGTGGTGGCCAAACGAGAAGCACCGGATTCCTGGATCCGAGGAGGAACATCTGAGAACATATGTCAGCAGATGTATCAGATGATGCACACTAGTGGTGGTAACTCTTTAGGAGCGCCCTGTAAGTTCCCCTTCCTGTATAACGGGACGTGGCACCACCGCTGCCTCCCTGCTGATGATGTCCATCCTCCAGACTGGTGTTCTACTAAAGACAGCTATGATCAGGATCAGCAGTGGGGAACCTGTCTAAAATATGaggaGGGGTGTGGTGCCCTATGGAACATCTCCAGGAACGGTCGTTGTTACCAGGTGATCTCCACAGCGTTGGTAACCTGGCACGAGGCTCGGGATTCCTGTCGAACTCAGGGCGGAGACCTGCTCAGCGTATCAAGCTCAGAGGATTTGCAGATCTTTAATGCAGGTAGTGAGCTACCAGAGAAGCTGTGGATTGGGCTAAACAGGCTGGACTGGTTGCAGGGCTGGCAGTGGTCAGATGGATCACCCCTGGCGTACATCCCATGGAATGCAGagtcaCTCTCCGAGTCCCTTTTGCTGGCATCAGACTGTGGAGTTTTACGCCCCAACAGGAAGTTTGACCGGGAGACTTGTGAGTCAAGGTTGCCGTACATCTGCGAGAAGATGGAGAACAGCACTCAGACTGCCGAAGCTGCAGATAAAATGATGTATAAATCGACGGTGTGTGATGACGGCTGGACCCCGCAGGGGGGATTTTGCTATAAGCTGTATGGTAATGAGAGCAGCATGTATAAGACATATGCTGATGCCCAGAAGGTGTGTCTGGAGAATGGAGCTCAGTTGGCCAGCATCCACAGCCTGGGGGATGTCGAGCTGCTCAACACTGACTTCAGtgCAGTCAGCAATGTTTGGATTGGTCTGAAGGCTGTTAAGAACACGGATCTGTTTAAGTGGGAGGACGGGACTAACGTGTCTTTTACGTACTGGGGGCGGACCCAGCCTCcactgctctcctccaccacagACAGCTGTGTGAAGACGGACCACGTATGGTTTGTATCACCATGCACCTCAGCGAGCCCCTTCGTGTGTAAGAAGAACGGCACTGTAAACGAGAGCGCCGCAGACGAGGGCTGTCCGCAGGACGGGgactGGAGGAGACATGGGAACGCCTGCTATAAGATTGACACTCGGGAAGTCTCCTACAAAAACAGCTGTAAACTCATCATCAATAACAGATTTGAGCAGGCGTTCATTAACAGTCTGCTGAAGGAGCATATTGGCAGTGAGTCGCTGTTCTTTTGGACTGGGCTTCAGGACTCTAAAGGAACAGGAGAGTACCAGTGGTTCAGCCAGTCTGAACAGAAGGACAGAGTCACCTATACAAACTGGAGATGGCCAGAACCAGCTAATACAGGAGGATGTGCGGTGATGTCCACAGCGAGTCCATTGGGTCAGTGGTTTGTGAAAAACTGCACAGTGTTTAAAGCTGGGAGTATCTGTAAAAGACTTGTATCTCCTGCCCCACCTGTACCGGCTCCAGAGGAGCCCAACATCAACGCCACCTGCCCTCAGGGATGGGTCTCCAGAGATGGCATGAAGTACTGCTATAAGGTGTTCCACGAGGAGCGACTGAGCCGAAAGCGCTCCTGGGAGGAAGCCGAGCTGTTCTGTGAGGCTCTGGGAGCTCATCTGCCCAGCTTCACTGAGCTAAACGAGATGACCGGACTACATAACATCCTCAGAGACTCCATTAGTGATGATCGCTTCTTTTGGGTCGGATTTAACCGGCGAAATCCAAACAATGACAACAGCTGGGAGTGGAGCGATGGCCGACCTGTGTCCATGACCATGTTTCCACAAGAGTTTCATGAAGATGATGATTATAACCGAGACTGTACCGCATTTAAGTCACTGAAAGTAAACTTCAAGCTGCTGTTCTTCTTCCTGCTGCATGATGTTCCTGTGCGCCCATTTTACCCCAGCGCCTTCCACTGCGACGCTAAACTGGAGTGGGTGTGTCAGATCCCTCGAGGAATTACTCCCAAGAACCCGGAGTGGTATAACCCAGATGGACACCATAACACATCCGTGTTCATTGATGGTCAGGAGTTCTGGTTTGTGAATCAGCCCCAACTGTCCTTTGAGGAGGCCATTATGTactgcagcagcaacagcagcagactAGCCACGCCCAACACTATCAATGCTGCCAGACTCCTGCAAGAACACCTATACAAGAATTCCGGTCCACAGCTTGAGAATTGGTGGGTTGATCTTCGCCAGCCTGGTTCTCTGCTGCCCATGAGGTACTCCCACAGGCATTACTATAACTCTGCGTTTTTGGGTAGATGTACCTCCATCAGCCAGAATTCCATCATGCCAGAATACCGGAAAGGCTGTGAGGTCAAACAGCCCTTCGTGTGCGAGACACTGAACGTCACTTCAGCAGAAACTGGAACCCAAGACCCAGAGGCCCCGGCCAAGCCGTGTGAGGAGGGAACTTTGGCTTTCAGAGACAAGTGTTTCACAGTGACCAAGCCTGGCTACATGAGCTTTAAACAAGCCAATGAGAGGTGCCACACCCTGAGGGGAACGCTACTGTCTGTCCGAGACCAAGCAGAACAAGACTTCATCACCACTCTTCTGCCGGGGCTGCCGCGGAAGCTCTGGATTGGTCTGAAACTGAGGCAGCATGACACCCAGTGGGTGGATAAATCGGACGTGAAGTACCTAAACTTTAACCCCCTCCTCCACGGGCAGCTGCGTCCCATATACATCTATACGTTTGAGCAGGATGGATTGGAGCTGTGTGCCTATATGTTCAACAATGCCCACTCTGACATGCTGGGCACCTGGGACTACACATCCTGCTCTCATGAGCAGAGCGTCGCCATCTGCCAGCACTATGCAGATAAACCAGAAGCTCCTGTTGTGTCGCAGGACGAGTTCACTGTGAATAACCACACGTTTAAGCTGGTCCTCAGGGAGAATCTGAACTGGATTGATGCGTGGGATTTGTGTAAGAGTAATAACATGGACCTGGCCAGCGTGTCTGACGCGTACCTGCAGGCTGTGCTCACTGTAAACGTCAGTAAAGTGGGACACCCCCTCTGGATCGGACTGTTCAGTGAAGATGAGCACTACCGCTGGACAGATCACAGCCACACTGTGTTCAGCCGCTGGAGTGACGAGGTCACTGCAGGGCACTGCGTGTACTTGGATACTGACGGTTTTTGGAAGGCCACAGAATGCGGGAGGCAGCTCGGAGGTGCAATTTGCCACGTCCCCCACGagaccgTTCAGCCTTCCCACGACAAAGGGCCGTGTCCACACAAAGGCAACGGAGCCAACTGGATCCCATTCAAGAACAACTGCTACACCTTTCTGCTGGCGTCTGTGAGATGGCAAGAACATGACAAGAACAACGACCGGAACACCTGCCAGGCTATTGCTGGTATGGGAGATATTCTGACCATTCGATCTGAGGAGGAGAACGAGTTCATAAGGACGCAGCTCCAGCCCTATGCAGATTTGGCCAGCTTTGTGTGGTTGGGAATTTACAAAGCCAATGGTAGCCAACTGAAATGGTATGATGACACCAACGTTCAGTACTCCAACTGGAAAAATGGAAGACCAGACGTGCCGCCGTTATTCATGGCTGGTCTGAATATGAATGGAGAATGGGACCTGATTGATTCCTATTTTTCAAGTTTCAAGCAGAATGCCATCGTGGTGTGTAAGATTGAACGTGATTCCAAAACAGAGTTTCAGCTGAGTCAGAGCGACGTGAAGGCTCCTCCAGGCTACACCTTCCGCTTGATCCCCAAGAAACTGAACTGGTATCAGGCCCTCGAGGAATGCAGCAGTGATGGCGGACATCTTGTGAGCATTCATAGTGAGGAGGCCAACAAGGACATGGCGCTGATCACTAAACGAGATGGATTCCCTCACTGGATTGGCCTCTCCAGACAAGATTTCAGCGGTTGGCCGTTTGAGTGGTCAGATGGGACATCACTGCAGTTCCAGCCCCAGGGGTTCGAGGTTCTAGGTGTTGGGTctgaggagcagtgtgtgtatgtggatcCTGAAGGACGCTGGTCTGCTGTAAACTGCCATGCGAAGCTGGAGGGAGCTATCTGTTACAAAACAGTCAACAAGTCGCAAATGTCTGCTCATTCCAGCGATAACTGTCCAAAGAGTGATGGGAAAGCTTCGTGGATCCAGTTTGAAGACCACTGTTATGCCATCGATATGACCCTCTATAACTATTCAGTGTACAGCATGGTGGATGCTCAGAGAATCTGTGAGACATTGGATCCCACCTCTCAGCTTTTGACCATTAAAAGTGAAGAGGAGAATGATTTTGTCTCGCGGCATGTTGCTGAAAACCCCCTCATCACCAGCCGCGTCTGGCTCGCTCTCAAATCAGCTGTGGGCGAGAGCTGGATGGATGGCAGTGCCCTGGGCTTCTCTAATTGGGGGCACACTCAGCCTCAGTCTGGGTGCGCAGTCTTGGTGGCGGTGAATGGAAGTTGGAACAATGCCAGCTGCATGAATAGCCGCAGCCGTGTCGTCTGCAAGGCGCCTGCCAAATCGAGCGCCGGCACTCCTGTGGCCTTGGCGTTTTTCATCATCGTGCTCTTCTGCCTCGTCGCTGTGGTGATCTTCGTCGTGTATAAAAGAACCAGACACCGCTTCTTCTCCACTGTTCGCTACCAGAGGAATTTTGATGAGGCCGACAGCACCAGTATGATTTCTGAGACTGAGTGAACGATGCACTGTAAGCAGcttcaaaaaatgtaaactaGAGGTTTATGTGCCTTTCAGTAAAAACTCCACCAAACCGCAGCAGGAACGTCCAAACACAAGTTCTACCTAAAGGCCTTATTTATTACTGCACTCTCAGAACTTCAGTCCGACAGGCTTTACGGGTTTTTGGTTTTCTAATGAATATTCTGAAGGAATACCAGTGGTTTTGTAGATTTACCTGAACGTGGTGgtcttgttgttgttgtttttaatttaatttgtcttaatggttttggtatgttttaatgaaaatacTGCCAAAAAGTGAAGACGTCGCAGTATTTAGAGTATGCGTGTGGTGTTTTGGGTACTGTGGCGGGGCTGGATGTTTCTTTGACTGGGTTTCTCCTGAGCTAGCACTGATTTGTTTACTGtcactcttttatttttttatgctaaaGTGGGATCATTTTTAagactttaaattattttttttcttcatttaaatatctaattaAGATCTAAATATGTTATTTGAATGTTTGCAAATAATGAATTTATGCACTTTCTGCATAACTATTTCTCCGGGTCTGACTGGGTCACTCTTTACTTTGCCTCCTAACTACAAAAGCGATCCTCAAACTAGTGTACATAGTTGCTCTGCTGAACCAAACTTTAATCCTCAGACTGTTCAAACTTCTAGTAGCTGCTAATGAGCACATGTCCCCCACTTCCCTATGGTCATCCAGAGTACAACAGTAATTATCTAAACAAAAGCAGGTTGTACTCTGCATGATTATTAGACATTGTTAAGCTGGAATGCACCAGAGCATGTGTTTGTCTAGAGAGTTAACTAAAACAGCAGTAAGAACAGTATTTGCAGTAATGAGTTTTTTGTAATTAGACTGTATGACAGGCCTGCAGTGAGGTGGGAAATGTCTGAGTGTTACTTTTAGATTTCTGCTGAGTTTACCTCCCCTGTTATCTGCACTCAAACTACTGatctgtaaagcactttaaagAGCTGTTTTCCTGTAACTGCTTTTGGACTGTTTGAGCACAACGGGAGGAAGTTCCcggtgttttgtgttttttcgaGAAAATATGCAATTTTTGCTGTGTGTGATCTTTGTAAATATCTTTTATGCATTAGTGATGTTCtgattataaaatgtttttagatgtgTAAACCAAAGACTGTCCTGAAATTATTGGTTAACAATTGATTTTTGATCCCTTTTCCAgttcagattttcagatttatCAAAATCAGAACAGTTAACCAAAGAGTAGATCTGTGTTTTATCTTTGGTTTAAGTTTGTAGTTCCTGATccagtttgtttttctgtggaAGAATCCGACCATCACTCAATAAAACGCCGTCTCCATACCCTGA

Function

GO: NA

KEGG:

id description
K06559 LY75, CD205; lymphocyte antigen 75

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55860 lncRNA downstream 46189 10031745 ~ 10032665 (-) True G41540
TU55823 lncRNA downstream 125563 9946205 ~ 9953291 (-) False G41514
TU55825 lncRNA downstream 125563 9950410 ~ 9953291 (-) True G41514
TU55710 lncRNA downstream 168578 9910046 ~ 9910276 (-) True G41424
TU55695 lncRNA downstream 198465 9880148 ~ 9880389 (-) True G41409
TU55880 lncRNA upstream 143970 10270493 ~ 10270820 (-) False G41551
TU55884 lncRNA upstream 154903 10281426 ~ 10289658 (-) True G41553
TU55885 lncRNA upstream 160198 10286721 ~ 10289658 (-) False G41553
TU56011 lncRNA upstream 395803 10522326 ~ 10522569 (-) True G41649
TU56012 lncRNA upstream 455927 10582450 ~ 10624619 (-) True G41650
XM_022669581.1 mRNA downstream 9051 10035329 ~ 10069803 (-) True LOC103036321
XM_007237344.3 mRNA downstream 49229 10023049 ~ 10029625 (-) True LOC103037233
XM_007237348.3 mRNA downstream 85602 9979581 ~ 9993252 (-) True hyls1
XM_007252570.3 mRNA downstream 956426 9112078 ~ 9122428 (-) True LOC103022371
XM_007252571.3 mRNA downstream 1136733 8937305 ~ 8942121 (-) True ncbp2
XM_007237339.3 mRNA upstream 3441 10129964 ~ 10174716 (-) True LOC103036004
XM_007237337.3 mRNA upstream 52028 10178551 ~ 10215444 (-) True LOC103035377
XM_022669582.1 mRNA upstream 99873 10226396 ~ 10254739 (-) False LOC103034850
XM_022669583.1 mRNA upstream 99873 10226396 ~ 10254737 (-) False LOC103034850
XM_007237335.3 mRNA upstream 99873 10226396 ~ 10254737 (-) True LOC103034850
TU55838 other downstream 114892 9962615 ~ 9963962 (-) True G41522
TU55824 other downstream 125503 9949866 ~ 9953351 (-) False G41514
XR_002649929.1 other downstream 956426 9112078 ~ 9122428 (-) False LOC103022371
TU55285 other downstream 1338572 8697913 ~ 8740282 (-) True G41071
TU55253 other downstream 1454413 8575851 ~ 8624441 (-) True G41052
TU55869 other upstream 36937 10163460 ~ 10225826 (-) False G41543
TU55870 other upstream 36937 10163460 ~ 10225826 (-) True G41543
TU55881 other upstream 143813 10270336 ~ 10270820 (-) True G41551
TU56162 other upstream 999862 11126385 ~ 11145161 (-) True G41763
TU56166 other upstream 1024146 11150669 ~ 11157835 (-) False G41767

Expression Profile