RNA id: XM_007237344.3


Basic Information

Item Value
RNA id XM_007237344.3
length 2079
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC103037233
representative True

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 10023049 ~ 10029625 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTTACTGTGtggagagcgagcgagcgagcgcgcGCCAGGCAGGCAGGCTGGAACCGGTTGAGGCAGAGACGGAGTCGCGGATGAGACAGGGCGCGCGCTGCGGCTGTATGGTAAAAAACAATTCAGAGATTTCACCGCTTTCTCGGGACCGGCTTTATGGTTAAACTACAATCTTCAATGAGTAAACATATTCCACAGTTCTGTGGTGTATTGGGTCACACATTTATGGAGTTTCTGAAGGGCAGTGGAGACTACTGCCAGGCTCAGCACGGCGTATATGCAGACAAGTGAACGGCGAGCCCTGCTACCTCACTGGAAGAGAGacttgtgtgagtgttttaagGTTGGCGGGATCGGACACGGAGAGCGGGCGTCCACAGCAGCCAGATCGGTCTGGATGGGGTAAAAAATCTGCAGAAGTGCACTGCCCTCGTTGGCCCTCCGTCTCCTCGCTCACCTGAGGAccagccttttttttatttatttattttttatgtaaaattctTTCCCCCCTTTTTTTCATTCCCAGAATTTGTTGTTTACGTCATCCTTTGGGTGACATTTTCTTTCTGACTCTCTGTGGCAGAAATTAATTTTTTGGGTCAGTGAAGTTTTAGtacattttgaattattttttccattcaaCAATGGCTCGTATGAATAGACCTGCCCCGGTGGAGATCACCTATAAAAACATGAGGTTCCTCATCACTCACAACCCCACCAATGCCACTCTGAATAAATTCATTGAGgaacTGAAGAAGTATGGTGTGACAACAGTCGTCAGAGTGTGTGAAGCAACTTATGATGCCAACCTGGTGGCCAAAGAGGGCATTCAGGTTCTGGATTGGCCATTTGATGATGGAGCTCCTCCTTCTAACCAGATTGTTGATGACTGGCTAAATCTGTTGAGGATTAAGTTCAGGGAGGAGCCAGGCTGCTGTGTTGCAGTCCACTGTGTAGCTGGCCTTGGAAGagCCCCGGTCCTGGTTGCCCTTGCTTTGATTGAGTGTGGAATGAAGTACGAAGACGCTGTTCAGTTTATTCGCCAGAAGCGTCGTGGAGCTTTTAACAGCAAGCAGCTCTTCTACTTGGAGAAGTATCGTCCAAAGATGCGTCTTCGATTCAAAGACTCGAATGGCCATCGCAACAACTGCTGTATCCAGTAGAGCTTTGCACAGTAACCCTGCTGGAGTAGCGTTATCTAGCCAGATGTTTCTCTAATGTTGGCCGTTTGCTCTTTTAATTAGTGAacatgtgaagaaaaaaaaaagctgcgaAAGAAAtgaatttgtatttgtttccccttttgtcttgtttttacaTTGTGGCCACTATTTGGCAAGTTTAGAgtgcttgtgtttgtttgttagaaACTGAAAGAGGGACGCTGATATGTTGCGtctcttttgtttgtttctttctcttttttggcAAATTGTCACAGGAATGCTCTCTgccaaacaaaaatgtttttacattcattaaaTATCAAAAGAAGTTATgatttatcatttttgttttggATGAGCCTAAGTCCATATTGATACCTGCCTTCCAATGGGTCGtatttaaatgccttattaCAACGGAAAGAGGCCACTTAATGGGTGCAAATCTATGGCCTTTGGAGAAGTGAAACAGCTGGACAGGAAAAttatgagtaaaaaataaatatatatcatgtattataatgtattacaatatatgatatataatgtattacacAGAATAACTGGGGAGGGAAGAAATGTATATGGAAGGTGCAGTATCTAGTTTGTGTTGTTTATCCAAACTTTGTTTACTAATTACTGCCATGTCAATAGtgtgatgtttgtgtttttgcttcAAACTGGACCTCTGCGATATTTTGTATGCCTTTTTATTTGATGTGCGTAACTTAATACTTGGGATACTTGATTTCTGTACGGTTATTGAAATGTGTACTATTAGATTGGCTATTTATACTATCAGTGGGTCGGTGTTTTAGTATAGTAAGAAAAGTTGTAACTGTTCACTTgagcaagagagcgagagaaagtacattaaagaaataaagaattacACTGAGAACATGA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function

KEGG:

id description
K18041 PTP4A; protein tyrosine phosphatase type IVA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55823 lncRNA downstream 69758 9946205 ~ 9953291 (-) False G41514
TU55825 lncRNA downstream 69758 9950410 ~ 9953291 (-) True G41514
TU55710 lncRNA downstream 112773 9910046 ~ 9910276 (-) True G41424
TU55695 lncRNA downstream 142660 9880148 ~ 9880389 (-) True G41409
TU55686 lncRNA downstream 148654 9874112 ~ 9874395 (-) True G41400
TU55860 lncRNA upstream 2120 10031745 ~ 10032665 (-) True G41540
TU55880 lncRNA upstream 240868 10270493 ~ 10270820 (-) False G41551
TU55884 lncRNA upstream 251801 10281426 ~ 10289658 (-) True G41553
TU55885 lncRNA upstream 257096 10286721 ~ 10289658 (-) False G41553
TU56011 lncRNA upstream 492701 10522326 ~ 10522569 (-) True G41649
XM_007237348.3 mRNA downstream 29797 9979581 ~ 9993252 (-) True hyls1
XM_007252570.3 mRNA downstream 900621 9112078 ~ 9122428 (-) True LOC103022371
XM_007252571.3 mRNA downstream 1080928 8937305 ~ 8942121 (-) True ncbp2
XM_022669547.1 mRNA downstream 1199311 8811683 ~ 8823738 (-) True LOC103026545
XM_022669546.1 mRNA downstream 1224097 8791997 ~ 8798952 (-) True LOC103026828
XM_022669581.1 mRNA upstream 5704 10035329 ~ 10069803 (-) True LOC103036321
XM_007237338.3 mRNA upstream 49229 10078854 ~ 10126523 (-) True ly75
XM_007237339.3 mRNA upstream 100339 10129964 ~ 10174716 (-) True LOC103036004
XM_007237337.3 mRNA upstream 148926 10178551 ~ 10215444 (-) True LOC103035377
XM_022669582.1 mRNA upstream 196771 10226396 ~ 10254739 (-) False LOC103034850
TU55838 other downstream 59087 9962615 ~ 9963962 (-) True G41522
TU55824 other downstream 69698 9949866 ~ 9953351 (-) False G41514
XR_002649929.1 other downstream 900621 9112078 ~ 9122428 (-) False LOC103022371
TU55285 other downstream 1282767 8697913 ~ 8740282 (-) True G41071
TU55253 other downstream 1398608 8575851 ~ 8624441 (-) True G41052
TU55869 other upstream 133835 10163460 ~ 10225826 (-) False G41543
TU55870 other upstream 133835 10163460 ~ 10225826 (-) True G41543
TU55881 other upstream 240711 10270336 ~ 10270820 (-) True G41551
TU56162 other upstream 1096760 11126385 ~ 11145161 (-) True G41763
TU56166 other upstream 1121044 11150669 ~ 11157835 (-) False G41767

Expression Profile