RNA id: TU55823


Basic Information

Item Value
RNA id TU55823
length 1709
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id G41514
representative False

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 9946205 ~ 9953351 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GACAACAGGCTTTTTTCCAGAATCCAGAGGTTTCCATTTTATTTGGTTATAATTGTAATAACTTCCATAATAAAaagacacacagcacacacaggcAAAGTGAAGGACGAGCCTACGAGGCAAGCAGGCAATGGCTTGTGGGAAGTATAGTATTGAGGCAGGAATATAGAAGAAAGCTTTTCAACAAGTACAATTGTCTGAACAGGTGGACCAGCCAGACAGAAAAAGCTGCTGGATGGAATAAGGAGGGATTGAGGAAGGTAAGCAGGCGGCTAGGGGAGATAGGGACGGGAGCTTTAACTGCTCTCTTTGCCCAGTGTGTGCTTATCAAACAGGTATTCGGCCATGCCGTTCTGAGGAGCACCCATGCGGCGCAGGTTGGACACCCAGTCGGCCAGCTCCTTGATGGACTTCACCTGTTCGTCCAGGTAGTGTGTCTCAATGAAGTCGCACATATGAGGATCGTTGCGTTCAGAGGCGACCTTGTGCAGGTCCAGCAGAGACTGGTTGACGCTTTTCTCCAGCTGCAGGGCACACTCCAAGGCCTCTACACCACTGCCCCACTCGTCACGCTCTGGTTTCTGTTgtgaaaaaggaaaaggaatCACATAATTATCAAGGACACTTCACAGTTTTCACATCTCTGAAAGCAGCATTTGACGCCTTCACTTCATATTAACTCTTCCAACATCCACAATACTTACTGTACTGAGGACTAATTTAATTGGCCAAAATTTCACAACTCTCTCATAATAAAGAATCTCTATATCTACTATACTGCTCACTTCTGTAACCGGGACAAACTTGTTATAATTTTCAATTCTAGAGCACCAACACGTGCCTCACTGTACTGCCTGTTTTAAAGCAGTTGTGGTGCAACTTCAGTGGTTACAAGTGATAAGAACTCCACCCAAGCCATCCTTCGATATCTCTAGTCCAGTTTTCGCCACTCCCTAACAGAGCCCCTCACATGCCTAAAGACACACACCACTCAATTTACTTTCTTATTCATAGTCCACCCCAAGCCCCTCTGTTATATAAGCTACTGGCTGCCTGCATATTTGTTCATAAAGTGCACAGCATATTACAAGGCCCTATtcattttagtaaataaaaccCAGAAAACACAAACCCTGATGTCCTGCAGGAAGATCCTTCCTCCCCTCTGGTTCTGAAGTTTCATCAGTTTCTCAGCATGCTCTCGCTCCTCATGAGACTGCTTGTGGAAAAACTTTGCGAAGTTGGGCAAAGCTTGGTCATCCCTGTCAAAGTAGTAGGACTGCATGGACAGGTAGACATAGGAAGCGTACAGCTCTAGGTTAATCTGCCGGTTGATGGCGGCCTCACAGTCCTGATGGAAATTCTGTCTCACTTGGGAGCTCATTATGCTGGTTTTCTGGTTGTCTGTCCGAAGATTAAACTTGAGTATTATTCGTGTAAAGCGGACGATTTCGTCGCAGAGTCTCTCAGCAGAGATAACAGCTAGTTAAACACCAACGTGGCGAGCTGGACTCTCAGATTACGGCTAAATAGATCACTCCAGGATAAATTACcgagaataaaaataatgaatatgaCAGTGGATTAAAATGTGTTAAGAGACAGAGGGTTGGTTGCCGTTCAAGCACTGTTGAAGCAGGTAACCTTCACTCCGTCCTAAGAAAACAAATACCGCTGTGACATTGAAACGTGTGGCGTAGCAACCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU55710 lncRNA downstream 35929 9910046 ~ 9910276 (-) True G41424
TU55695 lncRNA downstream 65816 9880148 ~ 9880389 (-) True G41409
TU55686 lncRNA downstream 71810 9874112 ~ 9874395 (-) True G41400
TU55684 lncRNA downstream 75248 9870746 ~ 9870957 (-) True G41398
TU55666 lncRNA downstream 102292 9804994 ~ 9843913 (-) True G41380
TU55860 lncRNA upstream 78454 10031745 ~ 10032665 (-) True G41540
TU55880 lncRNA upstream 317202 10270493 ~ 10270820 (-) False G41551
TU55884 lncRNA upstream 328135 10281426 ~ 10289658 (-) True G41553
TU55885 lncRNA upstream 333430 10286721 ~ 10289658 (-) False G41553
TU56011 lncRNA upstream 569035 10522326 ~ 10522569 (-) True G41649
XM_007252570.3 mRNA downstream 823777 9112078 ~ 9122428 (-) True LOC103022371
XM_007252571.3 mRNA downstream 1004084 8937305 ~ 8942121 (-) True ncbp2
XM_022669547.1 mRNA downstream 1122467 8811683 ~ 8823738 (-) True LOC103026545
XM_022669546.1 mRNA downstream 1147253 8791997 ~ 8798952 (-) True LOC103026828
XM_022669544.1 mRNA downstream 1156314 8779031 ~ 8789891 (-) True LOC103027111
XM_007237348.3 mRNA upstream 26290 9979581 ~ 9993252 (-) True hyls1
XM_007237344.3 mRNA upstream 69758 10023049 ~ 10029625 (-) True LOC103037233
XM_022669581.1 mRNA upstream 82038 10035329 ~ 10069803 (-) True LOC103036321
XM_007237338.3 mRNA upstream 125563 10078854 ~ 10126523 (-) True ly75
XM_007237339.3 mRNA upstream 176673 10129964 ~ 10174716 (-) True LOC103036004
XR_002649929.1 other downstream 823777 9112078 ~ 9122428 (-) False LOC103022371
TU55285 other downstream 1205923 8697913 ~ 8740282 (-) True G41071
TU55253 other downstream 1321764 8575851 ~ 8624441 (-) True G41052
TU55130 other downstream 1711509 8234107 ~ 8234696 (-) True G40959
TU54904 other downstream 3472131 6471432 ~ 6474074 (-) True G40751
TU55838 other upstream 9324 9962615 ~ 9963962 (-) True G41522
TU55869 other upstream 210169 10163460 ~ 10225826 (-) False G41543
TU55870 other upstream 210169 10163460 ~ 10225826 (-) True G41543
TU55881 other upstream 317045 10270336 ~ 10270820 (-) True G41551
TU56162 other upstream 1173094 11126385 ~ 11145161 (-) True G41763

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2312629 True 2291 lncRNA 0.44 3 NC_048590.1 32668631 ~ 32672388 (-)
eurasian perch (Perca fluviatilis) TU38839 False 1160 lncRNA 0.46 5 NC_053114.1 23016032 ~ 23019378 (+)
striped catfish (Pangasianodon hypophthalmus) TU223007 False 651 lncRNA 0.50 3 NC_047605.1 26521413 ~ 26571834 (+)
bowfin (Amia calva) TU38839 True 226 lncRNA 0.48 3 CM030124.1 1589579 ~ 1590721 (-)