RNA id: TU2312629


Basic Information

Item Value
RNA id TU2312629
length 2291
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G2021937
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 32667607 ~ 32697233 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCAGAATCCAGAGGTTTTTTATTTCACGACAACTGCCATCAAAACAAAAGCAGGCAATACAGTCAATTTGGAGAGGCAAAGAGCTACTGGCTTATAGGAACTGGAGGTTGAAGCTTAGTGCAAACTAAGGATTCAAGGATATACTTTATTGATGCCAGTCCCTGACAGAAAAATAGACTAGTCAGATCTATCAAGCAAGACAGAACTACAGCAAGAAAATGGAGGGTCTATCTATTCGCGCTCCTTCCCCAAAGTGTGTTTATCAAACAGGTACTCGGCCATGCCGTTCTGCGGGGCACCCATGCGGCGGAGGTTGGTCACCCAGTCACCCAACTCCTTTATAGACTTCACCTGCTCGTCCAGGTAGTGTGTCTCAATGAAGTCACACATGTGTGGGTCGTTGTGTTCAGAGCAGACCTTGTGCAGGTCCAGCAGGGACTGGTTTACACTCTTCTCCAGCTGCAGGGCACTCTCAAGGGCCTCAACACCGCTACCCCACTCATCCTTCTCTGGTTTCTGGAACAAGCCATACATATGCTGTTAGAGCAGCAGTAGTGCTTCCACACCATCCCCGACCAGCTTATGTCAAACAAACTGGAGTACACATTATTAAGCAGCCAATCAGTCAAGTTTAAAATGTCTGTTTTCTTAACCCTTCATTGCATTACTCTGTAAGCAAAGTCTGTCTTTCTCTATGATCCAATATGGCTGCTGTTTAATGTTCTCATTGCAACCACACATTTTCCCCCTGACAGTTTTGATCACTGGCAGCAGTTTAAATGTCTGTTGGCCCTCCGTAGATGGGCACTACCATATCCCCACACTAAACTCCTGTTGAAAGCACGCATTTCCTAACAGGCAAAACATGGACGTACACACAAGCACTTGCGCACACAATCACCTTGACATCCTGCAGGAAAATTCTCCCTCCCCTCTGGTTCTGAACTTTCATCAGCTTCTCAGCATGCTCACGCTCTTCGTGGGACTGGTTCTTGAAAAACTTGGCAAAGTTGTGTAGGGCCTGGTCATCACGATCAAAGTAATACGCCTGGACAGGTAGACATAGGAAGCGTACAGCTCCAGGTTGATTTGCCGGTTGATGGCAGCCTCACAGTCCTGATGGAAGTTCTGTCTCACAGGAGGCATGTTTCTGAAATTGAAATACATTAACTGTCAAGAGGAAAGGCAGGCATGTTTCGGACACTTTGGTTCAATGAATTCCGGCACTTAAAACAGCATGGAGGGCACTGATGCCAAAGTGAAGATTGAATTATTGAAGAGTCACAGTCTAACTTTACAGAACGTTGGTGCCATCAGGTTATAGTCCATGCAATAGATAAATGGTTTGTTTGGTTATGAGAGGTGTCACTGTAGCCCTTTAGTTGGCTAAGAGCGTGAGTCTCGCAAGTATTTGGACTCTATGAAGTGTGCACCTCTCCACACACGAAGTGTCCGTGTGCAACTATCAAAACAACTAATGCATTTCAACATTGGCAGGTCGTTGTCATTGTAAATCCAGCTGCCACTAAATAGTGAAACAAATATGTTCCTCTATTTAGCTAGATACTTCCCCAGAGAGGAAGTAAGAGGGTCGACGCCGACCAAAATACATACACAGATTGTCTGCTTTAAGGGCGACTGCACTTCCTGATATAGCCTGGTTTTTGATTtggttcattaagaaatgctacCGGCTATGACTGAACACAAACGAATTGGTTGTGGTTTGATAGGTGGGAAGAGTCCTAATTATGATTTGGGTTAGTCTTTCGATAAACCTCTGGGGCTACTTCGGAACATTATAAATGACAGTGTAAATGGGGAAAACATTTTCAATGTGCACACCTTTTAGTCCTCATGAAATGCTTTCAATATGTGTATACGTTTCAGTTAGTTTGAGGTTAAGCCATTGAAATGTAGAAACAGTCCCATATATAGTACACCAACTTACCGAAGGTCCCCAACCTAGCCCTGTAAGGATATCCGAAGTAAACCAACATTTAGAAAGGTTGCATGCAACTGCATTCCGAATTGATGATTACATGCATGCCAGGTGTGGCCAGGATTGATACAAAACGAAACTTAAATTATGTTGGGATGCAGTCACAACCACACGTTTCACAAAACTCAGTTTGACTCGACTGGCAAATTATCCCATTTACactgtagtcaattttgacagtaAAATAAATGTTCGGCATTATATTGATGTCACATGGGATATTGATGTCACACAGCGGtcaaaggcattgcatctcagtgcctCAGGTTTGGCCTTAACTGACTAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2312532 lncRNA downstream 12494 32653251 ~ 32656137 (-) True G2021864
TU2312610 lncRNA downstream 15958 32650318 ~ 32652673 (-) True G2021929
TU2312608 lncRNA downstream 16033 32650318 ~ 32652598 (-) False G2021929
TU2312609 lncRNA downstream 16160 32650318 ~ 32652471 (-) False G2021929
TU2312607 lncRNA downstream 16652 32650318 ~ 32651979 (-) False G2021929
TU2312706 lncRNA upstream 124555 32796943 ~ 32797210 (-) True G2022008
TU2312712 lncRNA upstream 135749 32808137 ~ 32808445 (-) True G2022014
TU2312713 lncRNA upstream 136547 32808935 ~ 32809148 (-) True G2022015
TU2312714 lncRNA upstream 137022 32809410 ~ 32809972 (-) True G2022016
TU2312674 lncRNA upstream 157038 32829426 ~ 32831032 (-) False LOC110506665
XM_021586435.2 mRNA downstream 82992 32530346 ~ 32585639 (-) False LOC110506653
XM_036963295.1 mRNA downstream 83149 32532198 ~ 32585482 (-) False LOC110506653
XM_021586434.2 mRNA downstream 83164 32530346 ~ 32585467 (-) False LOC110506653
XM_036963395.1 mRNA downstream 236170 32405119 ~ 32432461 (-) True LOC110506651
XM_036963396.1 mRNA downstream 236171 32405119 ~ 32432460 (-) False LOC110506651
XM_021586455.2 mRNA upstream 150653 32823041 ~ 32825749 (-) True LOC110506664
XM_021586456.2 mRNA upstream 157454 32829842 ~ 32831042 (-) False LOC110506665
XM_036963163.1 mRNA upstream 157454 32829842 ~ 32831115 (-) False LOC110506665
XM_021586461.2 mRNA upstream 228173 32900561 ~ 32926267 (-) True LOC110506670
XM_021586463.2 mRNA upstream 486954 33159342 ~ 33168227 (-) False nucb2a
TU2312501 other downstream 83272 32528233 ~ 32585359 (-) True LOC110506653
TU2312503 other downstream 138762 32523537 ~ 32529869 (-) True G2021837
TU2312089 other downstream 380075 32288194 ~ 32288556 (-) True G2021464
TU2311865 other downstream 680702 31982635 ~ 31987929 (-) False G2021282
TU2312650 other upstream 43738 32716126 ~ 32716913 (-) True G2021956
TU2312677 other upstream 138235 32810623 ~ 32818980 (-) True G2021979
TU2312670 other upstream 159239 32831627 ~ 32834481 (-) True G2021975
TU2312761 other upstream 202867 32875255 ~ 32878771 (-) True G2022042
TU2313928 other upstream 1127828 33800216 ~ 33804324 (-) True LOC100136595

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU55823 True 255 lncRNA 0.51 2 NC_053115.1 24923881 ~ 24932828 (-)
mexican tetra (Astyanax mexicanus) TU55823 False 1709 lncRNA 0.45 4 NC_035901.1 9946205 ~ 9953291 (-)