RNA id: TU2312670


Basic Information

Item Value
RNA id TU2312670
length 2018
RNA type TUCP
GC content 0.41
exon number 2
gene id G2021975
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 32831627 ~ 32834481 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTCCCTCTGTTTTCACTGTGCCCTCCATCTCTTTACTTACTCTCGCTCTGTCTTGAGGACATTACTGATTTCCTTCTGACAGTCTTTGAGCAGCAATTCCATTTCTCCATCCTTCCGGCCGTTGTTACAGAGCTgttggagaggagaacagaatagCCTGAGGCAGCTGACCAACCCCACCTCTGTTTCTGGATCCTATGGAAGCCAAGGCTAAGAGCGGGGCACCAGCGCCCAAGGCATCCTCTAAagcagagaagacagagaagaagGAGGCAGCTCCCCCTAAAAAGATTGACCCTGCTCAAGTAGAGCCTCTACCCCCAGCGGCCCCTGTGGAAGAGCCTCAAATGGAGGATGGATCAGCTGAACCAGAGGGGGCaccagagggggaggaggcagCAGAGGCCAGTACGGACTCCCTGGAAAGCCTGAAGCCCTTCCTCATTGGTGGTGCCATCATCGCTGCTGGTGCCATCCTGTTGGGGGCACTGTTGTTGGCACGAAGAAATTAACCACCACCCCTCATCATCAAAACCTATTGGTCGATGGGTTAACGAGTCACTTGCTGATTGGTTCATAGACTATCATGCAGCTGGTAGAGATGGGGTTATGGGGAGCCACTGTGCTTCTTAACTTTAATTCAGTCTGACCTTACTTGTAGTGAATATAAACATCAGTGAACATTCAAGTAATATATTTTTGGGCCCCTGCTAGTATACTCACGCATGAATTTGCTCCACCCCTCTAACTGCACCTACTTATAGGTCTACAGGCTTTTAATCACCATACAAATGCACTCCCAACAGttacactggacacacacatatacacagtacTTGAACACCCTATTTATCCAGTATTCACTGATAAACATTTTGATGTTTCTGGGTCTACTAATACATAAGTTAGAAGTAGAAATGCAGTAACTTTATATTGTTTGATTTGAAAAAGGTCATATGAAGTGAAGTATGAAGTATATTAAACATACTATTGTGAGTGCCTAGCAGGTTTGGGGTCAATTTCATTtgaattccagtcaattcaggaagtacactgaaattcctcTATTTATTTGAAGACCATACATGTTAGAGTGATAGTGCGAGAGACTGTGCAGCTACTGTAATAGTACTGTACATTGTATGTATGAATTTCGATTCAGAATGAAAATATTCTACATGTAATATGTGGTGTACCAATGTATGTAGTAGCTAGATCAGTCATGCTCAGCAAATCAGcatatacacaaatatattacATCCATATCCAACCTCCAGGAAAGCCTTGAAAGTATGATGAAATGATGATAATACATGCATTACGGTTTATTTTCTAATACATTAATATTTTTTGATAGTTTGATAGACCTAGAATCCAAGTAGAAAGCATGCATTATTGATGGGAGTAGAGAAATAGCTGGATTTATTTAGTAGATAAACTGAGATTGTTTCTTCTGTTGTTTCCCTATTCATTATAGAGAAGCACTTCTATTTTTGATAACAGAcaaacaggtttttttttttatcagaggCCTAGGAGATTTTCAACACCCAATCAAACATCTTGCTTGAACCCTGGCATGTAGCATACCATGATGCAATATCAATACCTCCAGCACAGCCACAGAACAGACACATATTCTGCAGATACATGTTCAAATAGCCTAGTCATCACGTCACAGAGTACTAAATCACATCTATCAGTTATTTTCCTTGGTCTCAAAGAGCGTATAAATGCAATAATTCCAGTAGGACTCCACATTTTAGCACATGTTCTCTGTGATATTAAAATAATGGTAATGATGGTGACATGTTGATGGGTAATACTATTGTAAATGGAGAATGAGAACCAGATGATGATGACGATTAAACCTATATTTCTTGATATCCCAGCTCCCTATATAACATATTTTCCCTCTTGCACACTCCCTCCCCTGACTCCAAAGCTCCTTGTGTAAATCCAAATGGTTGTCCTGTGACTTGACCTGACCTTTATTAAAGGCAATGAACCAGCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2312674 lncRNA downstream 595 32829426 ~ 32831032 (-) False LOC110506665
TU2312673 lncRNA downstream 595 32829845 ~ 32831032 (-) False LOC110506665
TU2312675 lncRNA downstream 595 32829845 ~ 32831032 (-) True LOC110506665
TU2312714 lncRNA downstream 21655 32809410 ~ 32809972 (-) True G2022016
TU2312713 lncRNA downstream 22479 32808935 ~ 32809148 (-) True G2022015
TU2312775 lncRNA upstream 59401 32893882 ~ 32894387 (-) True G2022053
TU2312784 lncRNA upstream 92834 32927315 ~ 32927655 (-) True G2022062
TU2312794 lncRNA upstream 104926 32939407 ~ 32939632 (-) True G2022071
TU2312814 lncRNA upstream 126655 32961136 ~ 32961394 (-) True G2022091
TU2312832 lncRNA upstream 146420 32980901 ~ 32981243 (-) True G2022109
XM_036963163.1 mRNA downstream 512 32829842 ~ 32831115 (-) False LOC110506665
XM_021586456.2 mRNA downstream 585 32829842 ~ 32831042 (-) False LOC110506665
XM_021586455.2 mRNA downstream 5878 32823041 ~ 32825749 (-) True LOC110506664
XM_021586435.2 mRNA downstream 245988 32530346 ~ 32585639 (-) False LOC110506653
XM_036963295.1 mRNA downstream 246145 32532198 ~ 32585482 (-) False LOC110506653
XM_021586461.2 mRNA upstream 66080 32900561 ~ 32926267 (-) True LOC110506670
XM_021586463.2 mRNA upstream 324861 33159342 ~ 33168227 (-) False nucb2a
XM_021586464.2 mRNA upstream 324861 33159342 ~ 33168228 (-) True nucb2a
XM_036963622.1 mRNA upstream 552371 33386852 ~ 33388945 (-) True LOC118944422
NM_001124587.1 mRNA upstream 966853 33801334 ~ 33815643 (-) False LOC100136595
TU2312677 other downstream 12647 32810623 ~ 32818980 (-) True G2021979
TU2312650 other downstream 114714 32716126 ~ 32716913 (-) True G2021956
TU2312501 other downstream 246268 32528233 ~ 32585359 (-) True LOC110506653
TU2312503 other downstream 301758 32523537 ~ 32529869 (-) True G2021837
TU2312089 other downstream 543071 32288194 ~ 32288556 (-) True G2021464
TU2312761 other upstream 40774 32875255 ~ 32878771 (-) True G2022042
TU2313928 other upstream 965735 33800216 ~ 33804324 (-) True LOC100136595
TU2314697 other upstream 1666372 34500853 ~ 34502486 (-) True LOC110506691
TU2315702 other upstream 2041941 34876422 ~ 34928381 (-) True G2024673
TU2316001 other upstream 2561593 35396074 ~ 35399967 (-) True G2024949

Expression Profile