RNA id: XM_021586456.2



Basic Information


Item Value
RNA id XM_021586456.2
length 647
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110506665
representative False

Chromosome Information


Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 32829426 ~ 32831115 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAGTATTGAGGGAGGAGCGACGCGCGTTTTCCCTGTTTGCTAGGGTTACTGCAGAACATTTACTTTACAGTGAGTCGATAACTACTTTATTGTTTGAGTCTCTATTTAGCCATGATATAAAACACATTGGGCCTCAGTCGAAAGAAATCAAAATGATTATCCCGGTCCGGTGCTTCACCTGTGGGAAAATCGTTGGTAATAAATGGGAGGCGTACCTTGGCCTCCTTCAAGCTGAATACACTGAAGGTGATGCCCTTGATGCTCTTGGTCTGAAGAGGTATTGCTGTCGGAGGATGCTGCTGGCCCATGTAGACCTCATTGAGAAGTTGCTGAATTATGCACCCCTGGAGAAATGATGGATACAACAACCACAAGAATCATCTGGCCTATTTACAGACAAGCCCTGGCTGACAGCCAGTGAGGCAGTGCACCCTGATGGATTGACATCCTCAAGAGACTAATTTCCCACCTCGTTTGAATtgtacatgtttttttgttgttggctaCAGCCATGTAATTTACATTATTGTGTAAATAAACAAGACAGGAGGTGAACCCCTTTAAGCAGCATGGGTCAGGCATTGAAAACTACCTAGTCCTCTTGTGTAGCAATCCCTTTTTGCAATAAACACACTTGTTCCAACTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2312714 lncRNA downstream 19870 32809410 ~ 32809972 (-) True G2022016
TU2312713 lncRNA downstream 20694 32808935 ~ 32809148 (-) True G2022015
TU2312712 lncRNA downstream 21397 32808137 ~ 32808445 (-) True G2022014
TU2312706 lncRNA downstream 32632 32796943 ~ 32797210 (-) True G2022008
TU2312629 lncRNA downstream 157454 32668631 ~ 32672388 (-) True G2021937
TU2312775 lncRNA upstream 62840 32893882 ~ 32894387 (-) True G2022053
TU2312784 lncRNA upstream 96273 32927315 ~ 32927655 (-) True G2022062
TU2312794 lncRNA upstream 108365 32939407 ~ 32939632 (-) True G2022071
TU2312814 lncRNA upstream 130094 32961136 ~ 32961394 (-) True G2022091
TU2312832 lncRNA upstream 149859 32980901 ~ 32981243 (-) True G2022109
XM_021586455.2 mRNA downstream 4093 32823041 ~ 32825749 (-) True LOC110506664
XM_021586435.2 mRNA downstream 244203 32530346 ~ 32585639 (-) False LOC110506653
XM_036963295.1 mRNA downstream 244360 32532198 ~ 32585482 (-) False LOC110506653
XM_021586434.2 mRNA downstream 244375 32530346 ~ 32585467 (-) False LOC110506653
XM_036963395.1 mRNA downstream 397381 32405119 ~ 32432461 (-) True LOC110506651
XM_021586461.2 mRNA upstream 69519 32900561 ~ 32926267 (-) True LOC110506670
XM_021586463.2 mRNA upstream 328300 33159342 ~ 33168227 (-) False nucb2a
XM_021586464.2 mRNA upstream 328300 33159342 ~ 33168228 (-) True nucb2a
XM_036963622.1 mRNA upstream 555810 33386852 ~ 33388945 (-) True LOC118944422
NM_001124587.1 mRNA upstream 970292 33801334 ~ 33815643 (-) False LOC100136595
TU2312677 other downstream 10862 32810623 ~ 32818980 (-) True G2021979
TU2312650 other downstream 112929 32716126 ~ 32716913 (-) True G2021956
TU2312501 other downstream 244483 32528233 ~ 32585359 (-) True LOC110506653
TU2312503 other downstream 299973 32523537 ~ 32529869 (-) True G2021837
TU2312089 other downstream 541286 32288194 ~ 32288556 (-) True G2021464
TU2312670 other upstream 585 32831627 ~ 32834481 (-) True G2021975
TU2312761 other upstream 44213 32875255 ~ 32878771 (-) True G2022042
TU2313928 other upstream 969174 33800216 ~ 33804324 (-) True LOC100136595
TU2314697 other upstream 1669811 34500853 ~ 34502486 (-) True LOC110506691
TU2315702 other upstream 2045380 34876422 ~ 34928381 (-) True G2024673

Expression Profile